BAC Information

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BAC

Clone NameMSMg01-160G22
Chromosome11 (Build37)
Map Location 21,601,844 - 21,748,925
singlet/doubletdoublet
Overlap geneAV249152
Upstream geneAftph, 1110067D22Rik, LOC100042035, Peli1, Vps54, Ugp2, LOC100042081, 4932414J04Rik, Mdh1, Pgam1-ps1
Downstream geneLOC382494, LOC666047, Otx1, Ehbp1, LOC100042146, Tmem17, LOC100042827, LOC100042846, LOC666078, B3gnt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160G22.T7 (MSMg01no160_g22.b1)MSMg01-160G22.TJ (MSMg01no160_g22.g1)
ACCAG360105AG360106
length737719
length of high quality
(start - end)		314 (46 - 359)514 (77 - 590)
definitionCHROMAT_FILE: MSMg01no160_g22.b1 PHD_FILE: MSMg01no160_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005CHROMAT_FILE: MSMg01no160_g22.g1 PHD_FILE: MSMg01no160_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:23 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,601,844 - 21,602,153)(21,748,519 - 21,748,925)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACATATACTAAATACACTACATATGAAAGCAAATACTATATTTT
GTTTCAATATATAGTTGATGAATTAAGTGTTGAAACAAGTAGATGTTTTT
CATCATGTTCCGGGTATCTCATCATGTACCTCAGTATTATAGCCAATAGC
TATATGTAAAAGAGACATGTTTCTCCCCAAGCCTGTGTGCTGGTTTTGGT
CAATTTGACTTAAGCCTAGACATAGCTTGGAAGAAAGAATCTTATCTGAG
AAAATGCTTTCATAAGATTAACCTGAAAGCAAGTCTGTAGGACATTTTCT
TAGTTAGTGTTTGTATATGCCCCCCCCCAGCTAGTTGTGGGTAATATGGA
CCTGGGGTATATGACCCCCCAAACTGAAAAAGACAGTAAGCAACACTCCT
TCATAGCCCCTGCATCAGTGTCTAACTTCAGGTATCTGCCCTGGTTTTCT
GTCCTGACTCATAAGCTTTAGATGAAATAAACCGTTTCCTCCCCTAGATA
CTTCTGGTCCTGGTGTTTCATCCCAGCTATTAAAATTCTTCCTACCTTAC
GCCGCGTTGTATTTTGCCTTATACATAAATTTCGTGCATTATCGTCTTCT
ATCCCCTTTTTTATCCCCTCTATTTATCATCTTCTTAGTCCCTGACTTTC
TTTATATCTCCTCCTTCTTTTTTATCACTTTTTCTTT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCACACTTTCATTAGTGGATTTTTG
TGAAAAGGCTAGGATTATCCCAAATCTTTGACAATATTTTGGCATCATTG
TCAGTCTTCTCTGCTTCTAGCTTCTCTCCTGCATTAGTGTCTCTACCATT
GCTGGGATTAAATAGCTGAGCAAAGCTACTTGAAAGAAGGCAGCTTTGCT
CTGGCTCACATTTCAAGGTCCGGCTCATCACACAGGAAGTCACGGCAGCA
GGAGCTGGAAGCAACTGTTCACATCACATCTGCTCAGGGAGACAGAGCAA
TGAAAACCACTGTTCAGCTAGCCTGCTCCCTACAAAACCCAGGGATGGTG
ATCACCACTGTCAAGCCAACCAGTCAAGATGTTCCTCCATAGGCATGGCC
AGAAGCTGACCGCCTCTAGAGGATTTCTTCCTGGTGTGCTGGTCTTACAT
GCCACTCTAGATCTGTGAAGATGGAACAATCTCCATAAACCCACTCACTG
GGTTCTAGGTGTGCAATTACTATGTTGCCCAGACAGTGTTTATTGGTGTT
TAACACTATGCCCCATCTATTTTTCCACAGCTTTCCAATATAGTATTTTT
CCTGTTATTGACTACCAAAACATATTTATAATCTGTAACGGTTTTACTTT
CCTTTTTCCTTTATTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_g22.b1 MSMg01no160_g22.b1 CHROMAT_FILE:
MSMg01no160_g22.b1 PHD_FILE: MSMg01no160_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:23 2005
         (314 letters)



>mm_chr11_21601640_21602353
          Length = 714

 Score =  600 bits (310), Expect = e-176
 Identities = 310/310 (100%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaacatatactaaatacactacatatgaaagcaaatactatattttgtttcaata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaacatatactaaatacactacatatgaaagcaaatactatattttgtttcaata 264

                                                                       
Query: 65  tatagttgatgaattaagtgttgaaacaagtagatgtttttcatcatgttccgggtatct 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tatagttgatgaattaagtgttgaaacaagtagatgtttttcatcatgttccgggtatct 324

                                                                       
Query: 125 catcatgtacctcagtattatagccaatagctatatgtaaaagagacatgtttctcccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catcatgtacctcagtattatagccaatagctatatgtaaaagagacatgtttctcccca 384

                                                                       
Query: 185 agcctgtgtgctggttttggtcaatttgacttaagcctagacatagcttggaagaaagaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agcctgtgtgctggttttggtcaatttgacttaagcctagacatagcttggaagaaagaa 444

                                                                       
Query: 245 tcttatctgagaaaatgctttcataagattaacctgaaagcaagtctgtaggacattttc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcttatctgagaaaatgctttcataagattaacctgaaagcaagtctgtaggacattttc 504

                     
Query: 305 ttagttagtg 314
           ||||||||||
Sbjct: 505 ttagttagtg 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no160_g22.g1 MSMg01no160_g22.g1 CHROMAT_FILE:
MSMg01no160_g22.g1 PHD_FILE: MSMg01no160_g22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:23 2005
         (514 letters)



>mm_chr11_21748014_21748927
          Length = 914

 Score =  756 bits (391), Expect = 0.0
 Identities = 403/407 (99%)
 Strand = Plus / Minus

                                                                       
Query: 108 ttagtgtctctaccattgctgggattaaatagctgagcaaagctacttgaaagaaggcag 167
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912 ttagtgtctctaccattgctgggattaaatagctgagcaaagctacttgaaagaaggcag 853

                                                                       
Query: 168 ctttgctctggctcacatttcaaggtccggctcatcacacaggaagtcacggcagcagga 227
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 852 ctttgctctggctcacatttcaaggtccggctcatcacacaggaagtcacggcagcagga 793

                                                                       
Query: 228 gctggaagcaactgttcacatcacatctgctcagggagacagagcaatgaaaaccactgt 287
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 792 gctggaagcaactgttcacatcacatctgctcagggagacagagcaatgaacaccactgt 733

                                                                       
Query: 288 tcagctagcctgctccctacaaaacccagggatggtgatcaccactgtcaagccaaccag 347
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 732 tcagctagcctgctccctacaaaacccagggatggtgatcaccactgtcaagtcaaccag 673

                                                                       
Query: 348 tcaagatgttcctccataggcatggccagaagctgaccgcctctagaggatttcttcctg 407
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 tcaagatgttcctccataggcatggccagaagctgaccgcctctagaggatttcttcctg 613

                                                                       
Query: 408 gtgtgctggtcttacatgccactctagatctgtgaagatggaacaatctccataaaccca 467
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 612 gtgtgctggtcttacatgccactccagatctgtgaagatggaacaatctccataaaccca 553

                                                          
Query: 468 ctcactgggttctaggtgtgcaattactatgttgcccagacagtgtt 514
           ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 552 ctcactgggttctaggtgtgcgattactatgttgcccagacagtgtt 506


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 914
Length adjustment: 10
Effective length of query: 504
Effective length of database: 904
Effective search space:   455616
Effective search space used:   455616
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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