Query= MSMg01no160_j02.b1 MSMg01no160_j02.b1 CHROMAT_FILE:
MSMg01no160_j02.b1 PHD_FILE: MSMg01no160_j02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:33 2005
(328 letters)
>mm_chr11_17456265_17456992
Length = 728
Score = 627 bits (324), Expect = 0.0
Identities = 324/324 (100%)
Strand = Plus / Plus
Query: 5 gaattcaaagccaaaactcacagctaagaagagcaaaggtgggtctttataacctgcagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagccaaaactcacagctaagaagagcaaaggtgggtctttataacctgcagc 264
Query: 65 atgaaagcatgactactacagatggtgtgttcaacttgaactaaaaaatggttagggatt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgaaagcatgactactacagatggtgtgttcaacttgaactaaaaaatggttagggatt 324
Query: 125 tgttagggaggcctctactaattcatatgaggtctatggggaagtacatttctgtgcatt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttagggaggcctctactaattcatatgaggtctatggggaagtacatttctgtgcatt 384
Query: 185 ctcaatttaagatccatacttctcatcatgcacctttgacaaagagaacagaccctatcg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaatttaagatccatacttctcatcatgcacctttgacaaagagaacagaccctatcg 444
Query: 245 tatcatggctactaactctgtggagtacaacatttaatggcttacacgacccagtttgtg 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcatggctactaactctgtggagtacaacatttaatggcttacacgacccagtttgtg 504
Query: 305 atatttgttaaactatccctacca 328
||||||||||||||||||||||||
Sbjct: 505 atatttgttaaactatccctacca 528
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_j02.g1 MSMg01no160_j02.g1 CHROMAT_FILE:
MSMg01no160_j02.g1 PHD_FILE: MSMg01no160_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:34 2005
(180 letters)
>mm_chr11_17603523_17604102
Length = 580
Score = 325 bits (168), Expect = 1e-93
Identities = 178/182 (97%), Gaps = 2/182 (1%)
Strand = Plus / Minus
Query: 1 actatctctatggcccatgtccttttaaaattttat--acacacacacacacacacacac 58
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 457 actatctctatggcccatgtccttttaaaattttatacacacacacacacacacacacac 398
Query: 59 acacacacacacacacagtgtggatcctgacaatgaaactcaggtcataaagagaacctc 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 acacacacacacacacagtgtggatcctgacaatgaaactcaggtcataaagagaacctc 338
Query: 119 tcatttattgatctatctcaccataacctagatcttgtttttctatccaatatttcaatc 178
||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 tcacttactgatctatctcaccataacctagatcttgtttttctatccaatatttcaatc 278
Query: 179 tg 180
||
Sbjct: 277 tg 276
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 7
Number of HSP's successfully gapped: 1
Length of query: 180
Length of database: 580
Length adjustment: 8
Effective length of query: 172
Effective length of database: 572
Effective search space: 98384
Effective search space used: 98384
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
