BAC Information

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BAC

Clone NameMSMg01-160L14
Chromosome11 (Build37)
Map Location 5,217,161 - 5,217,458
singlet/doubletsinglet
Overlap geneZnrf3
Upstream geneHormad2, Mtmr3, LOC100041006, OTTMUSG00000005065, Ascc2, 1110020P15Rik, Zmat5, Cabp7, Nf2, Nipsnap1, Thoc5, Nefh, Ap1b1, Rasl10a, Gas2l1, Ewsr1, Rhbdd3, Emid1, Kremen1
Downstream geneLOC100042016, LOC382478, Xbp1, Ccdc117, LOC100041183, Ankrd36, LOC665181, Mrps24, 2010005J08Rik, 2210015D19Rik, Dbnl, Pgam2, Polm, Aebp1, Pold2, Myl7, Gck, Ykt6, Camk2b, LOC100042156, Nudcd3, LOC100042173, Npc1l1, LOC100041242, LOC665250, Ddx56, Tmed4, Ogdh, LOC100042227
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-160L14.T7 (MSMg01no160_l14.b1)MSMg01-160L14.TJ (MSMg01no160_l14.g1)
ACCAG360315AG360316
length713807
length of high quality
(start - end)
309 (53 - 361)194 (75 - 268)
definitionCHROMAT_FILE: MSMg01no160_l14.b1 PHD_FILE: MSMg01no160_l14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:46 2005CHROMAT_FILE: MSMg01no160_l14.g1 PHD_FILE: MSMg01no160_l14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:26:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTATCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCTCTTCTAGTTACATAAAGAGTATCTGTGACCTGTTAAC
TAAATTCCTATCACTACAGGGAATCCTACAGGGGAGGAAAGAGGTATTCT
GAAGGCTGACAAGGAATCAGGAAAGCAACACTAGGATAAAAGCCCAAATA
AAGAATTTCAATCCTGGGTAGGCATGGTGGTACACACCTTTAATCCCAGT
ACTCAGGAGGCAGAGGTGGTCAGATCTCTGTGAGTTCGAGGCCAGTCTGG
TCTACAGAATGAGTTCTAGGACAGCCAGGACTATTCAGAGAAACCCTGTA
CCCCACCACCTTTGTCTCCCAAAAAAAAGATTTTCAGTCCCTCTATCCCT
GGAAAACAACTGGTCCACACGCCCTCTGCTGTATGGTAAGCTCAGACAGA
TATGAAGCTGCCAGCTCTGAGGGCTAGGCTTCAGGCTTGGAATCTAAAAC
CAGGAGCTCTGCATTTATTCCAGCCTCAGCTTGGAGCACCTTCCAAATCT
CTAAACTGTAAGTTCTTCTTATCTTCTTTCAGCTGGGAGAGCCTGTTCCG
CACATTCTGAAACACATGAACGAAAGCAACTGTCAAACCTGGAAGCCTGG
CTCTAGGTGAGTGAGCAGGCATCCCTTCCCCAGTCAGTCTCCAGGGACAG
AAAGCTTGACAAG
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTAGCTCTAAACCCCATTTTT
AATGGGGTTATTTGAATTTCTGGAGTCCAGCTTCTTGAGCTCTTTGTATA
TATTGGATGTTAGTCCCCTATCAGATTTAGGGTTGGTAAAAATCCTTTTC
CAATCTGTTGGTGGCCCTTTTGTCTTACTGACAGTGTCTTTTTCCTTTAC
AGAAGAAGCTTTGCAATTGTATGAGGTCCCATTTATCAATTCTTATTCTT
ACAGCACAAGCTATTGCTGTTTTGTTCATGAATTTTTCCCTTGGGCCCAN
ATCTTCAATTTTTTTTTTTCCCCCCCCCCCCTTATAATTTATAAGTCGCT
GGTCTTAAGTGACCTCCCCCGAATTAAAAAAATTTTGTATTTTGTTTGAT
TTATTATATACTGTCTATATATTCCAATTCTTCTATATCATATATATTAA
TTCTTTCGTTTTCATTCTATTCACATATTATAACTTAATTCATAAACATT
TCTTCAAATGACTTTATTATTCACTTATATATAAAAATTCAAATGTTTCT
TATTTATTTTAAATATAAGCATATTTATACTATAATAATTAATTTTATAT
TATTTACTTTATTTTATTCGTTTATTCATNTTATATTATCTTACTTGTTA
TTTCACATTCATTTCTTTCTTTATATTCTCACTCTTATATAAATCTCCTA
TTTCTTCATTAATTCCTACTTCATATATCTATTATTTTTAATTTATTTAT
AATCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no160_l14.b1 MSMg01no160_l14.b1 CHROMAT_FILE:
MSMg01no160_l14.b1 PHD_FILE: MSMg01no160_l14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:46 2005
         (309 letters)



>mm_chr11_5216957_5217665
          Length = 709

 Score =  561 bits (290), Expect = e-164
 Identities = 296/298 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttctagttacataaagagtatctgtgacctgttaactaaattcctatcacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttctagttacataaagagtatctgtgacctgttaactaaattcctatcacta 264

                                                                       
Query: 65  cagggaatcctacaggggaggaaagaggtattctgaaggctgacaaggaatcaggaaagc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cagggaatcctacaggggaggaaagaggtattctgaaggctgacaaggaatcaggaaagc 324

                                                                       
Query: 125 aacactaggataaaagcccaaataaagaatttcaatcctgggtaggcatggtggtacaca 184
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 325 aacactaggataaaagcccaaataaagaatttcaatcatgggtaggcatggtggtacaca 384

                                                                       
Query: 185 cctttaatcccagtactcaggaggcagaggtggtcagatctctgtgagttcgaggccagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 385 cctttaatcccagtactcaggaggcagaggtggtcagatctctgtgagttcgaggccagc 444

                                                                     
Query: 245 ctggtctacagaatgagttctaggacagccaggactattcagagaaaccctgtacccc 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ctggtctacagaatgagttctaggacagccaggactattcagagaaaccctgtacccc 502


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 709
Length adjustment: 9
Effective length of query: 300
Effective length of database: 700
Effective search space:   210000
Effective search space used:   210000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)