Query= MSMg01no160_m09.b1 MSMg01no160_m09.b1 CHROMAT_FILE:
MSMg01no160_m09.b1 PHD_FILE: MSMg01no160_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:50 2005
(319 letters)
>mm_chr11_23138176_23138888
Length = 713
Score = 557 bits (288), Expect = e-163
Identities = 299/306 (97%), Gaps = 6/306 (1%)
Strand = Plus / Minus
Query: 14 gaattcatgcttctattgccacaatcaggaagctgggaagcaagacagtggaatcctctg 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gaattcatgcttctattgccacaatcaggaagctgggaagcaagacagtggaatcctctg 454
Query: 74 tcagaatttagccaggtttaaccccacagtaggaagggctctagtgttctagggaaaaac 133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tcagaatttagccaggtttaaccccacagtaggaagggctctagtgttctagggaaaaac 394
Query: 134 agaatactaaatgtaaccgttactggaagctagcctccagtagagctcttagcatttaaa 193
||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 393 agaatactaaatgta------actggaagctagcctccagtagagctcttagcatttaaa 340
Query: 194 tgtctccacatttttctatcacacaagtttacctgctcctagctccagggagcctgcagt 253
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 tgtctccacatttttctatcacacaagtttacctgctcctagctccagggagcctgcagt 280
Query: 254 ctttgggccttcaggctcctgccatctctgttgaggaccctctggctgaatctcagtagt 313
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 279 ctttgggccttcaggctcctgccatctctgttgaggaccctctgggtgaatctcagtagt 220
Query: 314 gggagt 319
||||||
Sbjct: 219 gggagt 214
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 713
Length adjustment: 9
Effective length of query: 310
Effective length of database: 704
Effective search space: 218240
Effective search space used: 218240
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no160_m09.g1 MSMg01no160_m09.g1 CHROMAT_FILE:
MSMg01no160_m09.g1 PHD_FILE: MSMg01no160_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:26:50 2005
(282 letters)
>mm_chr11_22996123_22996803
Length = 681
Score = 445 bits (230), Expect = e-129
Identities = 269/282 (95%), Gaps = 1/282 (0%)
Strand = Plus / Plus
Query: 1 tttatacaggatgccatggttccaggagactaagtttctgtgaactttttgccttgggac 60
|||||||||||||||| ||||||||||||||| |||||||||||||||| |||| ||||
Sbjct: 201 tttatacaggatgccacggttccaggagactacgtttctgtgaacttttcgcctcaggac 260
Query: 61 agcattcaggctttttggcctgtcacacaggtcactactggagtggatgtagcagaaaac 120
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 261 agcattcaggctttttggcctgttacatgggtcactactggagtggatgtagcagaaaac 320
Query: 121 tccatattctgcataactaatatattctaacaagaagaaaggaaactcttcccaggtgta 180
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccttattctgcataactaatatattctaacaagaagaaaggaaactcttcccaggtgta 380
Query: 181 ctgtcaagtctcagaagactctcaagtgtaagtgtgactgctacaaggtaagcactcatc 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 381 ctgtcaagtctcagaagactctcaagtgtaagtgtgactggtacaaggtaagcactcatc 440
Query: 241 ctaaacaaagtaacttcagaagaatggggaaatcacgtggga 282
|||||||| |||| ||||||||||||||||||||| ||||||
Sbjct: 441 ctaaacaa-gtaatttcagaagaatggggaaatcatgtggga 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 282
Length of database: 681
Length adjustment: 9
Effective length of query: 273
Effective length of database: 672
Effective search space: 183456
Effective search space used: 183456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
