Query= MSMg01no161_b17.b1 MSMg01no161_b17.b1 CHROMAT_FILE:
MSMg01no161_b17.b1 PHD_FILE: MSMg01no161_b17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:21 2005
(416 letters)
>mm_chr11_11929611_11930424
Length = 814
Score = 733 bits (379), Expect = 0.0
Identities = 395/401 (98%), Gaps = 2/401 (0%)
Strand = Plus / Minus
Query: 16 gaattcaagccttcgctcctgtaaggtaagtactctaccaactgaacttgtagccttcgc 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gaattcaagccttcgctcctgtaaggtaagtactctaccaactgaacttgtagccttcgc 603
Query: 76 cggatctcttattaaaagttcccattcacaattctatatgtgtcatggggctttatgttt 135
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 602 cggatctcttattaaaagttttgattcacaattctatatgtgtcatggggctttatgttt 543
Query: 136 tacataatatccttagttttatctgtgactttgctattaacttttgtttgtgttttcatt 195
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 tacataatatccttagttttatctgtgactttgctattaacttttgtttgtgttttcatt 483
Query: 196 tttaaccttaaaggacttctttgttcttttatttgttgtactggaggttgaattcagggc 255
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tttaaccttaaaggacttctttgttcttttatttgttgtactggaggttgaattcagggc 423
Query: 256 ttcatatatgctggacaatagcccccccccaccagccctcttagattatgcagtagtgat 315
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttcatatatgctggacaata--ccccccccaccagccctcttagattatgcagtagtgat 365
Query: 316 tagggttcaggatatattttaattcagtggacacagcttttctacatggcccttttcgcc 375
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 364 tagggttcaggatatattttaattcagtggacacagcttttctacatggcccctttcgcc 305
Query: 376 agcatctgctactgtgccaaatcctacagcagagtgataga 416
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agcatctgctactgtgccaaatcctacagcagagtgataga 264
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 814
Length adjustment: 9
Effective length of query: 407
Effective length of database: 805
Effective search space: 327635
Effective search space used: 327635
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_b17.g1 MSMg01no161_b17.g1 CHROMAT_FILE:
MSMg01no161_b17.g1 PHD_FILE: MSMg01no161_b17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:27:21 2005
(384 letters)
>mm_chr11_11798887_11799671
Length = 785
Score = 194 bits (100), Expect = 1e-53
Identities = 197/248 (79%), Gaps = 37/248 (14%)
Strand = Plus / Plus
Query: 1 tttttgttttcctgagggaa-ggcaacacagggctccactagggaagaatgttgacccaa 59
|||||||||||||||||||| || |||| ||||||||| ||||||||||||||| ||
Sbjct: 201 tttttgttttcctgagggaagggaaacatagggctccaggagggaagaatgttgagataa 260
Query: 60 ggaagttagataggtttgagatatgcttgtgcgaatgtgtgtgtgtgtgtccctatatac 119
|||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct: 261 ggaagttagataggtttgagatatgcttgttcgaa--------tgtgtgtc-------ac 305
Query: 120 acacatatacatatacatatacatatacatatacacatacacatacacatacacatacac 179
|||| || || || ||| | ||||| ||||| ||||| ||||| ||||
Sbjct: 306 acac----ac----ac----ac----acacacacacacacacacacacacacacacacac 349
Query: 180 atacacatacacatacacatacacatacacatacacatacacatacacatatacatcata 239
||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct: 350 atacacatacacatacacatacacatacacatacacatacacataca--tatacat---a 404
Query: 240 tacatata 247
||||||||
Sbjct: 405 tacatata 412
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 57
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 384
Length of database: 785
Length adjustment: 9
Effective length of query: 375
Effective length of database: 776
Effective search space: 291000
Effective search space used: 291000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
