BAC Information

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BAC

Clone NameMSMg01-161G22
Chromosome11 (Build37)
Map Location 42,617,412 - 42,617,820
singlet/doubletsinglet
Overlap genenone
Upstream geneGabrg2, Gabra1, Gabra6, Gabrb2
Downstream geneAtp10b, EG544767, Pttg1, Slu7, LOC100039392, C1qtnf2, Ccnjl, Fabp6, LOC620562, 4631424J17Rik, Ttc1, Adra1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161G22.T7 (MSMg01no161_g22.b1)MSMg01-161G22.TJ (MSMg01no161_g22.g1)
ACCAG360838AG360839
length1,1881,234
length of high quality
(start - end)
429 (29 - 457)384 (70 - 453)
definitionCHROMAT_FILE: MSMg01no161_g22.b1 PHD_FILE: MSMg01no161_g22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:01 2005CHROMAT_FILE: MSMg01no161_g22.g1 PHD_FILE: MSMg01no161_g22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:02 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
NNGGTCACTCGGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTC
TTTGTTTAGCTCTGAGCCCCTTTTATTCTTGAAAAAGAAAGATTAGAAAC
TCGCTGTCATTTTCTGGTGACTCAGGACATGATTGAATATAGCTATGAGC
ACCAAAAACAATCAATCAATCTGCTCTTTGTAACACCTTAAAATGAACTT
AAAGATAAAGATAACACTGTTGATCTCTCAGATGTCTCTGGCTTTGGAAC
TTATCTTCCACATCAATCTAATTAATTTGAGACAGAAATATTATTCTCAA
GTAATTGTTGGATAGAACACACTTTTTGTTCTCAAAGGAAGCTATCTGTG
GACACTCACCAAACACTCTGATCTGTATGAGCCATCAGGATATGTAAGTG
ATTTTCATAAAAATCTGAACTACTTTGCATTCAAATCAAACTTGTCAGAT
TTTTTTGCCCCCCCCCTGGTATAGTGTTTACCCTAGGAATGAAAGCGGAA
CAAGATTTTGTTGTTTATTCATCCTGCCCTCCTAGCAAAATATTTTTTTT
TGTCTCATAATTTTCTTGTTGAAAAATCTAACCCAGACATTTTCTGCTCA
TGGTCCAATATTTTATTTGAAATCAGTCAGAGACTTATACATTATCATTC
AGAGATCCAATGTCTTTGAAAAAAGGAACCCCTGAAAGGCATGGAATACT
GCTATTTGCCTTGGTTTCTCTAGTACACATAACACCATGCATCCACTCTA
CAGATTCTTGAAAATAAATAAAAACTTAAATAAAAGAATAAAGGGAAACT
AGATAGTCTCACACGTATCAAGGAAGATTTATTAACTCACTCAATGACAA
TTTCCAAAGCAGGTTCTGACTTTGAAAAGGCACAATTTGGTAGTTCAAGC
ATGAGAGTCTTCTCTCAGCATGATAGCCTCTGTGGTTACCAAAACCCTTA
TTATAATTCCTCAGGAGGAAAATGGATTGTCTCCATAAAAAGAAAAACTG
GTTTTCAAAAAAAATTCTTTCTAACATAAAATGGGGAATAATCATGTTCC
CATTTCTGACATCAACCTGGGGGTCAGGAGATTAAAAATTTTGGGGAAAT
AATAATTCTCACCATTCTTGTTTACAAAGAAAAACCCCAACCGGCGCCTT
TTTTTTGTATTTTAAAAACTAAAAACTCTCGTTTATAA
NNAAGTGAGGTGAGCCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCTGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCTTGAGATTCCACTTCACTCCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCC
TCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTC
TGGCGGTTCCTCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAAT
ACCTCTCCTGGGCATATGGGCATATATCCAGATGTCCCAACCGGTAAGAA
GGACACATGCTCCACTATGTTCATAGCAGCTTTATTTATAATAGCCAGAA
TTTGTTTTTCCCCCCCCCCCCCCTCAACAGAGGAATGGATAAAAAAAATG
TGGTACATTTACACAATGGAGTACTACTCAGCTATTAAAAAAAATGAATT
TATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTG
AGGTAACCGAAACACAAAGGAACTCGCACAATATGTACTCACTGATAAGT
GGATATTAGCCCAGAAACTTAGGATACCCAAGATATAAAATACAATTTGC
TAAATGTGTGAAATTCAAGAAGAACGAAGACCAAAGTGTAGACACTTTGC
CCCTTCTTAGAAATGGGAACAAAACACCCATTGAAGGAGTTACAGAGACA
AAATTTGCAGCTGTGACGAAAGGATGGACCATCTAGTGATTGCCATATGC
AGGGATCCATCCCATAATCAGCTCCCAAACGCTGACCCCATTGCATAACC
TAGCAAGATTTTGCTGAAAGGACCCCAAAATAATTGGTCTCTTGGGAAAA
TATGTCCGGGGCCCTACAAAACACCAAGTGGAGTGACCCCGTCCGCTTTA
GGAAGGGCTCCCATGGGCCCCCACATGGAGGAACTTGAAAAAATTATTTC
CCGCATCTTTATGGGGAAATGTCTCCCCTCAATTGTGGGAAAACCCTTTT
GAAAATAACCACTTACCCCTGGGAGTTTTTTTTCCTTANCATGTTTTATT
TATTCAATATAAGGGCTCTTGACCCGTCCCTCTTTTTATATAAAATCTTC
TCTTGTGTTCTCTCACACATTTTATTTCTCTCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_g22.b1 MSMg01no161_g22.b1 CHROMAT_FILE:
MSMg01no161_g22.b1 PHD_FILE: MSMg01no161_g22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:01 2005
         (429 letters)



>mm_chr11_42617196_42618024
          Length = 829

 Score =  775 bits (401), Expect = 0.0
 Identities = 407/409 (99%)
 Strand = Plus / Plus

                                                                       
Query: 17  gaattctttgtttagctctgagccccttttattcttgaaaaagaaagattagaaactcgc 76
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 217 gaattctttgtttagctctgagccccatttattcttgaaaaagaaagattagaaactcgc 276

                                                                       
Query: 77  tgtcattttctggtgactcaggacatgattgaatatagctatgagcaccaaaaacaatca 136
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 tgtcattttctggtgactcaggacatgattgaatatagctatgagcaccaaaaacaatca 336

                                                                       
Query: 137 atcaatctgctctttgtaacaccttaaaatgaacttaaagataaagataacactgttgat 196
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 337 atcaatctgctctttgtaacaccttaaaatgaacttaaggataaagataacactgttgat 396

                                                                       
Query: 197 ctctcagatgtctctggctttggaacttatcttccacatcaatctaattaatttgagaca 256
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 ctctcagatgtctctggctttggaacttatcttccacatcaatctaattaatttgagaca 456

                                                                       
Query: 257 gaaatattattctcaagtaattgttggatagaacacactttttgttctcaaaggaagcta 316
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gaaatattattctcaagtaattgttggatagaacacactttttgttctcaaaggaagcta 516

                                                                       
Query: 317 tctgtggacactcaccaaacactctgatctgtatgagccatcaggatatgtaagtgattt 376
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 tctgtggacactcaccaaacactctgatctgtatgagccatcaggatatgtaagtgattt 576

                                                            
Query: 377 tcataaaaatctgaactactttgcattcaaatcaaacttgtcagatttt 425
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 tcataaaaatctgaactactttgcattcaaatcaaacttgtcagatttt 625


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)