BAC Information

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BAC

Clone NameMSMg01-161H06
Chromosome11 (Build37)
Map Location 92,750,361 - 92,750,766
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382545
Downstream geneLOC100039286, Car10, LOC629636, Utp18
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-161H06.T7 (MSMg01no161_h06.b1)MSMg01-161H06.TJ (MSMg01no161_h06.g1)
ACCAG360854AG360855
length1,2521,254
length of high quality
(start - end)
427 (29 - 455)411 (70 - 480)
definitionCHROMAT_FILE: MSMg01no161_h06.b1 PHD_FILE: MSMg01no161_h06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:04 2005CHROMAT_FILE: MSMg01no161_h06.g1 PHD_FILE: MSMg01no161_h06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:28:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCGACAGTGCGCGCTATAGACTCCTATAGGGAGAGGATCCGCGGAATT
CAGTCTTCTAGTTGACATTTTATTATGATAGGAAAATATTTCAAAATTTA
AAAAAGGAACTTGAAATCTATGCCACTTCTAGCCACAGGGACTTTGAATA
AGACATACTCCGTCAGAAAATGAAAATGAGAAAGCTCACAAACAGGCTTC
CAAAAAGGCCAGAATAGTTGGAGTCACAGAAGCACCTGCCTAACTCAGAA
TATGGCGATTGATTTTGTCAAATATCTAAATATAAGCCAGATGCATGGTA
AACTTCTGTCTTATGGCCTGGGTAGGTTAGCATCCGAGTTTCAACTTGGG
TGTAACAGAAGTAGAATCAGCTCATCATTCATAACTTCTTACAGATAACT
CATATAGTTACTAAGAGACGAGTTGTTAGAAGAATTTGTTCCATAAGATA
GTTTTTTTTTTCCCCCCCGCCATCCCAAAACGTTACCGTTTTAAAAAAAG
AGAGTTCGTTGAGACTTCCAGATTTGGGGAGAAAATAATCAACTGCAGCT
TTAATGTATTCATAAGCAATTGGAATTGTGATTGTTCTGAGGAATACACA
ATGAAACAGGAGCTAGTGTGATTGATGGACTGCCGGAACCTCTACCGGAA
ACATGCAGTCAACATTCTATGAGCATCTATTGTCTTCTTAAGGGAAAACG
TGCATCCTTTACAGCTGGCTAGAGGGTGATTCAGTGCTGTTGACCTGTGG
TCTGCAGCCACAAGAGGTTGATGATGTCCCCATATTCCCTTGCCCTTATA
AGTTGAAGATTAACAGGTTTTATTGGTACTGCCACTATTTCTGTTTCTCC
TGGCCTTTTTGTTGGTCGCTGAATTTATTTCGGTGGAAAATCTCACTTGA
GATCAAGGGAACACATTTTTCCATGCATTGGGTGGCTGTTTGGAAGGCAA
AGGGTAAATGTTAGAAAGGGCATGTCCATCTCTTTCACCAAAAAAACCCC
TTAAAAAAAATAATCTTATTTATAAACGGCCTCCACCCATAAAATAATAA
AAATGGGCTCCCCTTCCAAATAGAGTTCAAAAGACTCTCCGGTTTCTCTT
TCTTTCTTAAAAAAAAAAAGGTAAAAAATAGATTTCCTTTGGTTTCCTTC
TAACAAAATATATCTCTCGCTCTATTGTCCTCCCTTCCTCTTTTTACTCT
CTTACTCTTCACACACAATCGATTTCTTCTCTCTCATCACTATCCCCTTT
TA
NNGGGAGCAGTGTAGCGGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXAGGACTCCCCAAGTCCCACAATGGTGCCCAG
CTCTCTCCTCAGCAACAGACTGAAGGATCCCGGCAAATTTCAGCTGGTTG
GCACCGAGGTGGGGAGGCTTGCTGTAAGTTGCACCCTTAGGAACCAGACG
TTTGCGACCACCATGGCAGACACGAATCCTCTAAATGACGTAACGTTGCC
TAGTCTTGTACCCCAGTCTTTGTGCTTTAACAGACGGGGTGGGACAGCTC
AAAGAGCTGGTAGTGTTGCCAGCAATGGACCCTCAGAAGAAAGCTCATCA
TGTCAGACTGCTTCTTCCTCCATAGCTCCTGGATATATTTGCATGCACCC
TTCTTGGCTCACCTGATGGCTCTCGCCAGAGGAAAGGGTATGTGTTTTTT
TTTTTTTCCCCCCCCCCCCCTGAGGACTGTCCTTATTAAAGAAGAAGGGA
GAACAAATGAAAAACACTTCAAAGCGCTCACATGTTCAGTATCACTGACA
ATATTGGTTGTCTTGAAAATCTTAAATTAACAATTTATATCTCTATGAAT
ATAGGTTTCTGCGCTATCTGAAGGCATCACTAGAAGTTAAGCTATGATCT
TTCTCTGAGAGAAAACAGGATTAGCACTAGAATCAATCCCATGGAAGGCA
CACAGACTGTCACCTGAGCAAGGAATAGTCCAAACATCAGAAACAAAACG
AATGGCAAATGTGTGCAAAGACAAACACCCTTAGCTCAGAACATAACTTG
CTGAGTAGGTACATTTTGGTAAGGATATTAAGGCTAGGAATTAGAAGTGT
CTGCAAAGGAAGAGTCCATCATAAAGTAAAGAAAAAAGGGGCAAAATCTG
GTTATTTTAGGACAAAGCTATCCGGGGTGGAAAAAAAAATACCCGTTAAA
AAAGTGTAAAAATACAGTGTAAAAAAGGGTATTATTCCCTGGAGGGTCCC
TCCCTTCCCCTTATTTTCCAAATTTGTTCCCGGAACTCCCTCCCGGGGGG
GTTTTTTTCCTCATTCTTAGGAGGAATGGAAAAATCCCTCCCCCGGTGCC
TCCAATCTTCTGTATAATGTGCGGGGGCTCTAACATTATACCTGGTGGTA
TTCATAATCCTTCCTGGCATATATACTCTTTTTCCCTCTCGATTTTCTTT
CATCTAAATTCCACCTATCCTCCCATCTTGTATACATTGTTTCTCTACAT
TTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no161_h06.b1 MSMg01no161_h06.b1 CHROMAT_FILE:
MSMg01no161_h06.b1 PHD_FILE: MSMg01no161_h06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:04 2005
         (427 letters)



>mm_chr11_92750144_92750970
          Length = 827

 Score =  731 bits (378), Expect = 0.0
 Identities = 399/406 (98%)
 Strand = Plus / Minus

                                                                       
Query: 18  gaattcagtcttctagttgacattttattatgataggaaaatatttcaaaatttaaaaaa 77
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gaattcagtcttctagttgacattttattatgataggaaaatatttcaaaatttaaaaaa 564

                                                                       
Query: 78  ggaacttgaaatctatgccacttctagccacagggactttgaataagacatactccgtca 137
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 563 ggaacttgaaatctatgccacttctagtcacagggactttgaataagacatactccgtca 504

                                                                       
Query: 138 gaaaatgaaaatgagaaagctcacaaacaggcttccaaaaaggccagaatagttggagtc 197
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gaaaatgaaaatgagaaagctcacaaacaggcttccaaaaaggccagaatagttggagtc 444

                                                                       
Query: 198 acagaagcacctgcctaactcagaatatggcgattgattttgtcaaatatctaaatataa 257
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 acagaagcacttgcctaactcagaatatggcgattgattttgtcaaatatctaaatataa 384

                                                                       
Query: 258 gccagatgcatggtaaacttctgtcttatggcctgggtaggttagcatccgagtttcaac 317
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 gccagacgcatggtaaacttctgtcttatggcctgggtaggttagcatccgagtttcaac 324

                                                                       
Query: 318 ttgggtgtaacagaagtagaatcagctcatcattcataacttcttacagataactcatat 377
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | 
Sbjct: 323 ttgggcgtaacagaagtagaatcagctcatcattcataacttcttacagataactcagag 264

                                                         
Query: 378 agttactaagagacgagttgttagaagaatttgttccataagatag 423
           |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 263 agttactaagagacgagttgttagaagaatttgttccatatgatag 218


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 427
Length of database: 827
Length adjustment: 9
Effective length of query: 418
Effective length of database: 818
Effective search space:   341924
Effective search space used:   341924
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)