Query= MSMg01no161_n12.b1 MSMg01no161_n12.b1 CHROMAT_FILE:
MSMg01no161_n12.b1 PHD_FILE: MSMg01no161_n12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:55 2005
(412 letters)
>mm_chr11_17456265_17457077
Length = 813
Score = 739 bits (382), Expect = 0.0
Identities = 400/406 (98%), Gaps = 1/406 (0%)
Strand = Plus / Plus
Query: 5 gaattcaa-gccaaaactcacagctaagaagagcaaaggtgggtctttataacctgcagc 63
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaagccaaaactcacagctaagaagagcaaaggtgggtctttataacctgcagc 264
Query: 64 atgaaagcatgactactacagatgccgcgttcaacttgaactaaaaaatggttagggatt 123
|||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 265 atgaaagcatgactactacagatggtgtgttcaacttgaactaaaaaatggttagggatt 324
Query: 124 tgttagggaggcctctactaattcatatgaggtctatggggaagtacatttctgtgcatt 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tgttagggaggcctctactaattcatatgaggtctatggggaagtacatttctgtgcatt 384
Query: 184 ctcaatttaagatccatacttctcatcatgcacctttgacaaagagaacagaccctatcg 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctcaatttaagatccatacttctcatcatgcacctttgacaaagagaacagaccctatcg 444
Query: 244 tatcatggctactaactctgtggagtacaacatttaatggcttacacgacccagtttgtg 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tatcatggctactaactctgtggagtacaacatttaatggcttacacgacccagtttgtg 504
Query: 304 atatttgttaaactatccctaccatatgctgtattagtcagagttctctagactattatc 363
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct: 505 atatttgttaaactatccctaccatatgctgtattagtcagagttctctagactagtaac 564
Query: 364 agaattaatagaatggatctctctctctctctctctctctctctct 409
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 agaattaatagaatggatctctctctctctctctctctctctctct 610
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 39
Number of extensions: 6
Number of successful extensions: 6
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 412
Length of database: 813
Length adjustment: 9
Effective length of query: 403
Effective length of database: 804
Effective search space: 324012
Effective search space used: 324012
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no161_n12.g1 MSMg01no161_n12.g1 CHROMAT_FILE:
MSMg01no161_n12.g1 PHD_FILE: MSMg01no161_n12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:28:55 2005
(328 letters)
>mm_chr11_17603412_17604139
Length = 728
Score = 594 bits (307), Expect = e-174
Identities = 322/327 (98%), Gaps = 2/327 (0%)
Strand = Plus / Minus
Query: 1 tcactgaaccatctctatggcccatgtccttttaaaattttatacacacacacacacaca 60
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 tcactgaactatctctatggcccatgtccttttaaaattttatacacacacacacacaca 516
Query: 61 cac-c-cacacacacacacacacagtgtggatcctgacaatgaaactcaggtcataaaga 118
||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 cacacacacacacacacacacacagtgtggatcctgacaatgaaactcaggtcataaaga 456
Query: 119 gaacctctcacttactgatctatctcaccataacctagatcttgtttttctatccaatat 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 gaacctctcacttactgatctatctcaccataacctagatcttgtttttctatccaatat 396
Query: 179 ttcaatctgtcttttagttgtagagttgatattaatagtgttagagagatgtttattatt 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ttcaatctgtcttttagttgtagagttgatattaatagtgttagagagatgtttattatt 336
Query: 239 gtttctcctcattttgttggcattgctgtatatgatctttttttttattgttagtatgta 298
||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct: 335 gtttctcctcattttgttggcattgctgtatatgatcttttctttcattgttagtatgta 276
Query: 299 tgtatgtatgtatgtatttacttgcaa 325
|||||||||||||||||||||||||||
Sbjct: 275 tgtatgtatgtatgtatttacttgcaa 249
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
