BAC Information

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BAC

Clone NameMSMg01-162K01
Chromosome11 (Build37)
Map Location 30,739,109 - 30,739,349
singlet/doubletsinglet
Overlap genePsme4
Upstream geneC230094A16Rik, Spnb2, EG666427, LOC666432, 4930505A04Rik, Acyp2, LOC654445, LOC666452, LOC666470, LOC631243
Downstream geneGpr75, LOC100042469, 4933407N01Rik, Asb3, Chac2, Stc2, 2310022M17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162K01.T7 (MSMg01no162_k01.b1)MSMg01-162K01.TJ (MSMg01no162_k01.g1)
ACCAG361699AG361700
length683681
length of high quality
(start - end)
634 (50 - 683)241 (374 - 614)
definitionCHROMAT_FILE: MSMg01no162_k01.b1 PHD_FILE: MSMg01no162_k01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:02 2005CHROMAT_FILE: MSMg01no162_k01.g1 PHD_FILE: MSMg01no162_k01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGTTTAGCTCTGCACCCCATTTTTAATGGGGTTATTTGA
TTTTCTGGAGTCCACCTTTTTCAGCTCTTTATATATATTGGATATTAGTC
CCCTATCTAATTTAGGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGT
CTTTTTGTCTTATTGACGGTGTCTTTTGCCTTGCAGAAGCTTTGCAGTTT
CATGAGGTCCCATTTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTG
TTCTATTCAGGATTTTTTTCCCTGTACCCATATCTTCGAGACTTTTCCCC
ACTTTCTCCTCTATAAGTTTCAGTGCCTCTGGTTTTATGTGAAGTTCCTT
GATCCACTTAGATTTGACCTTAGTACAAGGAGAGAGGAATGGGTCGATTC
GCATTCTTCTACATGATAACAACCAGTTGTGCCAGCACCATTTGTTGAAA
ATGCTGCCTTTTTTCCACTGGATGGTTTTAGCTCCCTTGTCGAAGATCAA
GTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTCCATT
GGTCTACTTGTCTGTCACTATACCAGTACCATGCAGTTTTTATAACAATT
GCTCTGTAGTAAAGCTTTAGGTCAGGCATGGTG
NCCGAAGCAGTGGGTAGGCGGGNGGNCGCCTGGTTTCGACCCCGAGNGAA
CNANACAATTTACGNGACCGACGGGGNNNACAAAGACACNNAAGAAAACA
AGCNGGGGGGNGGTTTTCCCCCCCCAAANNCANAAGGGANNCANGGGGAN
ACGGAGGCAGGAAGAGCCCNNAAGCNCAGGAGNNAAGAACAGACGGGGCA
ANANCCGGAAAAAAAANAAGGCANNNCCAGAAACAGNAGGCAGACANAAT
TATGTATTAGTTACATGGTAAGCCCAAAACTTAGTTAAGAAGGCTATCAC
TTTGTTTCCATGGATTTTTTTTTTTTNCCCAAANNNAAAAAAAAAAAAAA
GCGGAAGAATTCCTACTCCCCCATTTTATCAAAAAGAGATTACTTAAAAG
CTATAAAGGAATGTATTGAACTTGAACTTAGGACTTAATAATAAAGTGTA
ACAATTATATTATATGTATACAATAAAAAGGAATTCATAGTGAAAAAGAT
ACAGCAATAACTGTTTTACCTATTTTTCTTTCAGCTCTCTTCCTAAAAGT
GAAAATTCAGGCCCTTTACAACAATCATCTCCCAACTTTTTTCATTTCCC
CAGAAATCAATGTGTAAGCGGTAAGTTACATTTATATTGCAGAGCTAGTT
TTTATATTTTAACGGGAACACCTTGTCTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_k01.g1 MSMg01no162_k01.g1 CHROMAT_FILE:
MSMg01no162_k01.g1 PHD_FILE: MSMg01no162_k01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:02 2005
         (241 letters)



>mm_chr11_30738909_30739549
          Length = 641

 Score =  466 bits (241), Expect = e-136
 Identities = 241/241 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttatcaaaaagagattacttaaaagctataaaggaatgtattgaacttgaacttagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatcaaaaagagattacttaaaagctataaaggaatgtattgaacttgaacttagga 382

                                                                       
Query: 61  cttaataataaagtgtaacaattatattatatgtatacaataaaaaggaattcatagtga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cttaataataaagtgtaacaattatattatatgtatacaataaaaaggaattcatagtga 322

                                                                       
Query: 121 aaaagatacagcaataactgttttacctatttttctttcagctctcttcctaaaagtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aaaagatacagcaataactgttttacctatttttctttcagctctcttcctaaaagtgaa 262

                                                                       
Query: 181 aattcaggccctttacaacaatcatctcccaacttttttcatttccccagaaatcaatgt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aattcaggccctttacaacaatcatctcccaacttttttcatttccccagaaatcaatgt 202

            
Query: 241 g 241
           |
Sbjct: 201 g 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 241
Length of database: 641
Length adjustment: 9
Effective length of query: 232
Effective length of database: 632
Effective search space:   146624
Effective search space used:   146624
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)