BAC Information

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BAC

Clone NameMSMg01-162N11
Chromosome11 (Build37)
Map Location 24,655,651 - 24,818,178
singlet/doubletdoublet
Overlap geneLOC100042282
Upstream geneRel, Papolg, A830031A19Rik, LOC100042256, Bcl11a
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162N11.T7 (MSMg01no162_n11.b1)MSMg01-162N11.TJ (MSMg01no162_n11.g1)
ACCAG361843AG361844
length714714
length of high quality
(start - end)
317 (48 - 364)288 (76 - 363)
definitionCHROMAT_FILE: MSMg01no162_n11.b1 PHD_FILE: MSMg01no162_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:18 2005CHROMAT_FILE: MSMg01no162_n11.g1 PHD_FILE: MSMg01no162_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:18 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(24,655,651 - 24,655,962)(24,817,892 - 24,818,178)
sequence
CATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTGCCTCTTGATCCAACTACATCCAGAAGAGACTGTCTCCTCAG
CACTGGGTAGAGCTTGAGCACTAGGAACCCTCAAAGCCCACCTTCACAGT
GGCACACTCTCTCCAACAAAACTGTACCTACTCCAACAAGGCACACCTTT
TGATAGTGCCACTCTCTGGCCATGCAGATTCAAACCACCACACATTGCTT
TCCTCGCAGGACTCTTCCCAAAACACTGGGTACTGTTTTCTGTCTGAGTC
ACAGTGGTCAGCTACAAAATGCCACAGCAGTTATGTGTTTAGATGCTTTC
AAAACCACCATAGTCTCACATAGCCTCACTCTGCAGCCTACAGGTAAGGC
AGGCTGTATGACGGGAATGCCTAGTTGTCAAGTGAAATAAGGCTTTGTAG
TAAAGAAGTGACCTAGTTTCTTAGTTCTTTGATCCTTGATTACAAAGCCT
GAACTAAGCACATGGCCAAATGGGCATGAAATCTCACCATTTTGAAGCAT
GTAAAACAATGATAGCTTCAGCTTTGAGCACCTTTTCTATATTAACTCTT
ACAGTCCCCCCAACCACCTGTGAAGTTAAGGACTACAACCTGAGGTACAG
TTAGGTAGCTTGCTCTAGAAGGAAAAACTGTTCCCTATTGTAAGGATGGA
ATGGCTGTTGGCTN
TCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXATTATTTCTCCTCTCTGAGGTAAAC
AATAGGCCAAGGGTAGAAATGGATGACAATAAGAACAGTAATTATTTTCA
AAAATAATTGTGTAACTTGACTTGCCTGAGATCAGAGAAAGCATAGGCTA
CTCAGGCCCCACAAAACACCTAAACTAATTGCCCCCAAATTAGTACCTGT
CCTTGGACTTTGGGAAAAGTAATTCATCTATGATGTTAGGGGAAAGATGA
GAGACGGGTTATGTGGGGTAGGGGAAAAAAGGTCTATTAATTCCATATTG
TTCCTACTAGTTTTTTTATTTACCCCCCACCCCCCGTACGTACATGTATG
ATGGTATGTTGAAAACACAGGCTTAGAATACAAACTTGTTCTGAGTTTAG
ACTCCACAGTTTACCGACTGTGTGAGGCAGAGTGAGTTCTTGTGGATCAT
CATCTCTTCAAGTAAAAGAGTGCCGATATAGACTTAGATTTTTCAAACCT
ACTTTAACCTCCCTTGTAGTCCACCACCCACCAGAGGTAGTAGAAAGGGA
GGGTTTATAGGGAAAAGTGGGGCAAAACCAATCTTTGTTGTTAGGTCATC
AGCAATTTAATTCACACGAATCACCAGCATTTGGTATCTCAATCCACTAA
CAAACACTATACAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_n11.b1 MSMg01no162_n11.b1 CHROMAT_FILE:
MSMg01no162_n11.b1 PHD_FILE: MSMg01no162_n11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
         (317 letters)



>mm_chr11_24655447_24656163
          Length = 717

 Score =  596 bits (308), Expect = e-175
 Identities = 311/312 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgcctcttgatccaactacatccagaagagactgtctcctcagcactgggtaga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgcctcttgatccaactacatccagaagagactgtctcctcagcactgggtaga 264

                                                                       
Query: 65  gcttgagcactaggaaccctcaaagcccaccttcacagtggcacactctctccaacaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 265 gcttgagcactaggaaccctcaaagcccaccttcacagtggcacactctctccaataaaa 324

                                                                       
Query: 125 ctgtacctactccaacaaggcacaccttttgatagtgccactctctggccatgcagattc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctgtacctactccaacaaggcacaccttttgatagtgccactctctggccatgcagattc 384

                                                                       
Query: 185 aaaccaccacacattgctttcctcgcaggactcttcccaaaacactgggtactgttttct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaaccaccacacattgctttcctcgcaggactcttcccaaaacactgggtactgttttct 444

                                                                       
Query: 245 gtctgagtcacagtggtcagctacaaaatgccacagcagttatgtgtttagatgctttca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gtctgagtcacagtggtcagctacaaaatgccacagcagttatgtgtttagatgctttca 504

                       
Query: 305 aaaccaccatag 316
           ||||||||||||
Sbjct: 505 aaaccaccatag 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no162_n11.g1 MSMg01no162_n11.g1 CHROMAT_FILE:
MSMg01no162_n11.g1 PHD_FILE: MSMg01no162_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:18 2005
         (288 letters)



>mm_chr11_24817692_24818379
          Length = 688

 Score =  547 bits (283), Expect = e-160
 Identities = 286/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   attatttctcctctctgaggtaaacaataggccaagggtagaaatggatgacaataagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 attatttctcctctctgaggtaaacaataggccaagggtagaaatggatgacaataagaa 428

                                                                       
Query: 61  cagtaattattttcaaaaataattgtgtaacttgacttgcctgagatcagagaaagcata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 cagtaattattttcaaaaataattgtgtaacttgacttgcctgagatcagagaaagcata 368

                                                                       
Query: 121 ggctactcaggccccacaaaacacctaaactaattgcccccaaattagtacctgtccttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 ggctactcaggccccacaaaacacctaaactaattgcccccaaattagtacctgtccttg 308

                                                                       
Query: 181 gactttgggaaaagtaattcatctatgatgttaggggaaagatgagagacgggttatgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gactttgggaaaagtaattcatctatgatgttaggggaaagatgagagacgggttatgtg 248

                                                          
Query: 241 gggtaggggaaaaaaggtctattaattccatattgttcctactagtt 287
           |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 247 gggtaggggaaaaatggtctattaattccatattgttcctactagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)