BAC Information

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BAC

Clone NameMSMg01-162P08
Chromosome11 (Build37)
Map Location 72,333,036 - 72,333,673
singlet/doubletsinglet
Overlap gene9830002I17Rik
Upstream gene9230020A06Rik, Wscd1, Aipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a
Downstream geneLOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-162P08.T7 (MSMg01no162_p08.b1)MSMg01-162P08.TJ (MSMg01no162_p08.g1)
ACCAG361920AG361921
length718713
length of high quality
(start - end)
323 (44 - 366)638 (72 - 709)
definitionCHROMAT_FILE: MSMg01no162_p08.b1 PHD_FILE: MSMg01no162_p08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:26 2005CHROMAT_FILE: MSMg01no162_p08.g1 PHD_FILE: MSMg01no162_p08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:26 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTCTTTAGACCATGCTGGCCTCAAATTCAGAGATCAGCTTGTCTCT
GCCTTCCAAATGCTGGTATTAAAGCCATGCACCACCACACCTGGCTAAGA
AAATCTATTCTTGGCAGCACTAGAAAAATTCAATATTGGATACAAGATTA
ATAAAAGGAAAAAAAATGCTAGGTGAAGATGGGTAAAATAGCATGTCTTA
GTTAGGGTTTTACTGCTGTGAACAGGCACCATGACCAAAGCAAGTCTTAT
AAAAGGCAACATTTAATTGGGGCTGGCTTACAGGTTTAGAGGTTCAGTCC
ATTATCATCAAGGTTTGAACATACCCGCATCCAGAGAGGCAAGGTACAGG
AGGAGCTGAGAGTTCTATATCTTCATCTGAAGGTGGCTAGTAGAAGACTG
ACTTTCACACAGCTAGGGTGAGGGTCTTAAGCCCATACCCACAGTGACAC
ACCCACTCCAACAAGGCCACATCTCCTAATAGTGCCACTCCCTGGACCAA
GCATATACAAACCATCACACTACATAAATACTCAGTAACTATCAGTCTTT
TTGTTTCATTTTTCAAGATGTTTCTCTGTATAACAGCCCTGGCAACTATC
AGTCTTAAAATAAAACTTAAATGTACTAAGCACTGATTACATAGACTGTA
AATCATGTGGAGTGTTCT
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCCCTGCCTTTTTTATTTCAAGTTTTCCCC
TTATCTATTTAATATTTGTGTTTGTGCATGCAAAGAGGAGGTCAAGAGAC
ATGTGTACAGACCACAAAGCCAGAGGACAGCTTGCAGAATTCAGTTCTCT
TCTTCTACCAGGTTGGTCCCCGGGATCGAACTCAGGGTGTCAGGCTTGGC
AGCAGGCCCTTTTACCTGCTGAGCCATCTCACTAGTCCCATAGAGAGTTC
CTTAAGCTGTGTGATTGGCAGTTGCAAAATGCCCCCAGTTAATCCTTCCA
CATCATGTTCATGCCTTTACACTGCGCCCTTCCTCAGTGAACCTGGGTGG
GTTCTACATACCTTAGACAACAGAAGAAGGCAGAAGTGATGTACTTCCTG
GGGACTAAAAGGCTTTGCATCTTCCACTTGGGTCTCTTAGATATTGGTCT
AAAAAGAAGCTTATCTACTCTAACAAAGGATACAGAGTCCCAGAGAGAAG
AGCCACGGGAGACTGGTCAGTGTGGGCATTACACCCATCCCAGGTCAGTG
CAGTTACAAACAGACAGAAAGCAGAAGAGAAAGCATCCGGCCATGAGAAA
TCACTGAAGGCCAAGGATGTGACTCAGTTGGCAGAGTGCTCAGCTAGCCT
GCACAAAGCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no162_p08.g1 MSMg01no162_p08.g1 CHROMAT_FILE:
MSMg01no162_p08.g1 PHD_FILE: MSMg01no162_p08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:26 2005
         (638 letters)



>mm_chr11_72332836_72333873
          Length = 1038

 Score = 1203 bits (622), Expect = 0.0
 Identities = 634/638 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccctgccttttttatttcaagttttccccttatctatttaatatttgtgtttgtgcatgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccctgccttttttatttcaagttttccccttatctatttaatatttgtgtttgtgcatgc 260

                                                                       
Query: 61  aaagaggaggtcaagagacatgtgtacagaccacaaagccagaggacagcttgcagaatt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 261 aaagaggaggtcaagagacatgtgtacagaccacaaagccagaggacagcttgcagaaat 320

                                                                       
Query: 121 cagttctcttcttctaccaggttggtccccgggatcgaactcagggtgtcaggcttggca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagttctcttcttctaccaggttggtccccgggatcgaactcagggtgtcaggcttggca 380

                                                                       
Query: 181 gcaggcccttttacctgctgagccatctcactagtcccatagagagttccttaagctgtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gcaggcccttttacctgctgagccatctcactagtcccatagagagttccttaagctgtg 440

                                                                       
Query: 241 tgattggcagttgcaaaatgcccccagttaatccttccacatcatgttcatgcctttaca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgattggcagttgcaaaatgcccccagttaatccttccacatcatgttcatgcctttaca 500

                                                                       
Query: 301 ctgcgcccttcctcagtgaacctgggtgggttctacataccttagacaacagaagaaggc 360
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctgtgcccttcctcagtgaacctgggtgggttctacataccttagacaacagaagaaggc 560

                                                                       
Query: 361 agaagtgatgtacttcctggggactaaaaggctttgcatcttccacttgggtctcttaga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 agaagtgatgtacttcctggggactaaaaggctttgcatcttccacttgggtctcttaga 620

                                                                       
Query: 421 tattggtctaaaaagaagcttatctactctaacaaaggatacagagtcccagagagaaga 480
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tattgttctaaaaagaagcttatctactctaacaaaggatacagagtcccagagagaaga 680

                                                                       
Query: 481 gccacgggagactggtcagtgtgggcattacacccatcccaggtcagtgcagttacaaac 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gccacgggagactggtcagtgtgggcattacacccatcccaggtcagtgcagttacaaac 740

                                                                       
Query: 541 agacagaaagcagaagagaaagcatccggccatgagaaatcactgaaggccaaggatgtg 600
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 aaacagaaagcagaagagaaagcatccggccatgagaaatcactgaaggccaaggatgtg 800

                                                 
Query: 601 actcagttggcagagtgctcagctagcctgcacaaagc 638
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 801 actcagttggcagagtgctcagctagcctgcacaaagc 838


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 638
Length of database: 1038
Length adjustment: 10
Effective length of query: 628
Effective length of database: 1028
Effective search space:   645584
Effective search space used:   645584
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)