BAC Information

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BAC

Clone NameMSMg01-163E08
Chromosome11 (Build37)
Map Location 7,203,161 - 7,203,440
singlet/doubletsinglet
Overlap genenone
Upstream geneOgdh, Zmiz2, Ppia, H2afv, LOC665277, LOC665283, LOC626342, Purb, Myo1g, LOC100041286, Ccm2, LOC665327, AB182283, Tbrg4, Wap, LOC100041311, Ramp3, LOC665314, LOC626419, LOC665339, LOC665343, LOC100041332, Adcy1, LOC100041347, Igfbp1, Igfbp3
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E08.T7 (MSMg01no163_e08.b1)MSMg01-163E08.TJ (MSMg01no163_e08.g1)
ACCAG362137AG362138
length721721
length of high quality
(start - end)
314 (46 - 359)283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no163_e08.b1 PHD_FILE: MSMg01no163_e08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:50 2005CHROMAT_FILE: MSMg01no163_e08.g1 PHD_FILE: MSMg01no163_e08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCTACTTAACTAACAACCCACCAAACAACCAAAATCCCAGTAACA
GCTGACATCTCTCAGGAACCCTCTGAAAAGTCCCCAGAATTCCAAACATC
ACACAATTGCAGATACTATCTGCCACTGGCAAAATCACACCTCTGCTACA
GCATGAGGCAAATCATAGTCAGCTGCTGTGGACAATCTGAAGCACCCCCA
TATCCCACATCTGGGATTAAAATGAAAACATATTCTTATAATATTTCTGT
GTTTAAAAAAAAACCAAATTTCCCAAATTGTCACTACAACTAAGGAGTGT
GAAGAACTCTTTTATAGCCCCCCACCCTACCCGGTATTCTAAGTCAAGAG
AGGATTTAAAGCACCCACGAGGTCTGCATGGGTTGCATGCGACACCACTT
CTTTAGATAAGGGACTGCAACCCCTTCAGATTTTATTGTAAAATCAATTC
TCTGTGACTACTAAGGGGCAACTATATTGGCAATATCACTCAAACCATAA
ACTCTGCATTTCATTTAATAAAAAAGTTTCTGACTGAAGAAGACATTCTC
CTGCTTATTGTTGTCCCAATGTGCTACATGAAGAGGCAGAGGCAGAGTGT
TGACTGATACACATACACACACACACTCTCTCATACTCACTCTATTATAC
TCTCACACTTTCACCGGCTTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTGTGGTTAGAGGACATGCTTGG
GGTATTTAAATCCTTTTGAATGTACTAGGGCTCATTTCATGGCCCCACAC
ATAGCCCATTGTTCTTGAGAAGACTGTGTTCTGTTGTAATCTGAAGTGTT
TGAAAAGCCCCTAGGTCTATGGCACAGCACACAGTGTCTCTGTTTACTTG
TTGATATTAGGACTTGTTCTCACATTAGTGAGATCTCAGTGTTGATGTGT
TACACCACCCCCCCCCCCTTGCTTCCCCCACTGTCCATGCTGTCTGTGCT
GCCCCTGCTGGGTGGCTCCCTTTACTAAACGACATGTCATCCTCTGCTTC
CTGAGCTCAGGCACCCCGAGCTAAAAAAAAATATGGTTGATGCACTTCAC
CTGGGGATGACCAGCACTTACACTGCTGGAAATGTTCTTCGTTATTCCTA
GTAAGTGTTTTTCGTCTCATTGCCTGCTTAGTATTGTAGCTATGGTCTGT
CTGTTGATAAATGCTTACACAGCACATCTCTTTCTAGTCTTTCATTTTAA
GAACAGTCGTGTCCTCACCTATAGCACATGTTCTTTGAAAGTAGCCAGGC
AGTTAAATATCTGTATCTGCTACAATTCCCAAAACACAATGATTTCAAGA
ACGAAGACCATCGCGTGCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e08.g1 MSMg01no163_e08.g1 CHROMAT_FILE:
MSMg01no163_e08.g1 PHD_FILE: MSMg01no163_e08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:50 2005
         (283 letters)



>mm_chr11_7202961_7203640
          Length = 680

 Score =  516 bits (267), Expect = e-151
 Identities = 278/283 (98%), Gaps = 3/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttgtggttagaggacatgcttggggtatttaaatccttttgaatgtactagggctcatt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttgtggttagaggacatgcttggggtatttaaatccttttgaatgtactagggctcatt 260

                                                                       
Query: 61  tcatggccccacacatagcccattgttcttgagaagactgtgttctgttgtaatctgaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcatggccccacacatagcccattgttcttgagaagactgtgttctgttgtaatctgaag 320

                                                                       
Query: 121 tgtttgaaaagcccctaggtctatggcacagcacacagtgtctctgtttacttgttgata 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgtttgaaaagcccctaggtctatggcacagcacacagtgtctctgtttacttgttgata 380

                                                                       
Query: 181 ttaggacttgttctcacattagtgagatctcagtgttgatgtgttacaccaccccccccc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 381 ttaggacttgttctcacattagtgagatctcagtgttgatgtgttacaccacccccccc- 439

                                                      
Query: 241 ccttgcttcccccactgtccatgctgtctgtgctgcccctgct 283
             ||||  |||||||||||||||||||||||||||||||||||
Sbjct: 440 --ttgcagcccccactgtccatgctgtctgtgctgcccctgct 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 680
Length adjustment: 9
Effective length of query: 274
Effective length of database: 671
Effective search space:   183854
Effective search space used:   183854
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)