BAC Information

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BAC

Clone NameMSMg01-163E19
Chromosome11 (Build37)
Map Location 89,888,288 - 89,888,598
singlet/doubletsinglet
Overlap genenone
Upstream geneDgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp
Downstream geneTmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-163E19.T7 (MSMg01no163_e19.b1)MSMg01-163E19.TJ (MSMg01no163_e19.g1)
ACCAG362157AG362158
length729724
length of high quality
(start - end)
316 (45 - 360)287 (75 - 361)
definitionCHROMAT_FILE: MSMg01no163_e19.b1 PHD_FILE: MSMg01no163_e19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:52 2005CHROMAT_FILE: MSMg01no163_e19.g1 PHD_FILE: MSMg01no163_e19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:30:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGAATAGAACTGTTTATGAACTGATCTTATGGAACAAAGCAGGGAG
AGCTGATCACTGGCTTTTTTCTTTAGGCTGAAAAAAAATTAAAGTCTTGT
TTTATAAAGACAGCCATACGTTGTCTCTTTCTTGTTTAGTTAAGTAAACT
ATACAGAAAAAGATGATTGTCTTTGTTAAAAAGAGACAAGTGTGGAACTT
GGTAAAAACCAAGGATCCCAAGAGAGTGCATTGCCCCAGAAGGAGAACAA
GATGTTTCTTTGACCATGACTCAGAGTGGGAAACCCAAGACTCCAAATTC
CAATTGACCTTTTACACTCACCCACCACATTCTGCCATCCGGACGTTTGA
AGGATGTCCAATTGCACGGCCTCAGTATTCTCGGGGGCACCACCTCTCTC
CCCTGATTTATTCCTTGTTATTTATCTTCTCAGATCATTTTACTGGGAAA
AAAAAAACCTTGTTTGCTGCCCTGGTAGAACTCAGTCATTTTCCCCCTCC
TAGGGTCCCAGCATAAGGGTTTGGCTCACTTCCACAACAAAACTAGCATT
TCTGACTCTGCCTGCATGCTGTGCAATGAAAATAGCCACGAACTGGTCAT
CAGGAAACTTGGATTTGCATCTTCTTTCTGCTTTATGGCAGCGAGCAGGG
GAACCCCAACTGCTGAAGTTCCATTTGTG
ATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTATCATG
AATGGGTGTTGGATCTTGTCACATGCTTTTTCTGCATCCAACGAGATGAT
CATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTGATGG
ATTTTCGTATATTAAACCATCCCTGCATTCCTGGAATAAAACCTACTTGG
TCAGGATGGATGATTGCTTTAATGTGTTCTTGGATTCGGTTAGCGAGAAT
TTTATTGAGGATTTTTGCATCGATATTCATAAGAGAAATTGGTCTGAACT
TCTCTATCTTTGTTGGACCTTTCCGCGGTTTAGGTATCAGAGTAATAGTG
GCTTCATAAAACGCCCCGGGTAGAGTACTTTCTACTTCTATCTTGTGAAA
AAGTTTGTGCAGAACTGGAATTAGATCTTCTTTGAAGGTCTGATAGAACT
CTGCACTAAACCCGTCTGGTCCTGGGCTTTTTTTGGCTGGGAGACTATTT
ATAACTGCTTCTATTTCTTTAGGGGATATGGGACTGTTTAGAAGGTCAAC
TTGAACCTGATTCAACTTTGGTACTTGCCATCTGTCCCGAAATTTGTCCA
TCCTTTCCATAATTTCTCATCTTGATGTATATACCCCCCTATCATACGAC
TGATGCGTTTCTCAATTTCCCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no163_e19.b1 MSMg01no163_e19.b1 CHROMAT_FILE:
MSMg01no163_e19.b1 PHD_FILE: MSMg01no163_e19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:30:52 2005
         (316 letters)



>mm_chr11_89888084_89888799
          Length = 716

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcagaatagaactgtttatgaactgatcttatggaacaaagcagggagagctgatc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gaattcagaatagaactgtttatgaactgatcttatggaacaaagcagggagagctgatc 456

                                                                       
Query: 65  actggcttttttctttaggctgaaaaaaaattaaagtcttgttttataaagacagccata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 actggcttttttctttaggctgaaaaaaaattaaagtcttgttttataaagacagccata 396

                                                                       
Query: 125 cgttgtctctttcttgtttagttaagtaaactatacagaaaaagatgattgtctttgtta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 cgttgtctctttcttgtttagttaagtaaactatacagaaaaagatgattgtctttgtta 336

                                                                       
Query: 185 aaaagagacaagtgtggaacttggtaaaaaccaaggatcccaagagagtgcattgcccca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 aaaagagacaagtgtggaacttggtaaaaaccaaggatcccaagagagtgcattgcccca 276

                                                                       
Query: 245 gaaggagaacaagatgtttctttgaccatgactcagagtgggaaacccaagactccaaat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 gaaggagaacaagatgtttctttgaccatgactcagagtgggaaacccaagactccaaat 216

                      
Query: 305 tccaattgacc 315
           |||||||||||
Sbjct: 215 tccaattgacc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)