BAC Information

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BAC

Clone NameMSMg01-164D04
Chromosome11 (Build37)
Map Location 84,939,391 - 84,939,612
singlet/doubletsinglet
Overlap geneUsp32
Upstream geneTada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1, Mrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, LOC668794, LOC234848
Downstream gene1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3, Tbx2, Tbx4, LOC668751, Brip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164D04.T7 (MSMg01no164_d04.b1)MSMg01-164D04.TJ (MSMg01no164_d04.g1)
ACCAG362751AG362752
length748763
length of high quality
(start - end)
299 (50 - 348)227 (71 - 297)
definitionCHROMAT_FILE: MSMg01no164_d04.b1 PHD_FILE: MSMg01no164_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:59 2005CHROMAT_FILE: MSMg01no164_d04.g1 PHD_FILE: MSMg01no164_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:31:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACCTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTTTGAAATGCTTAGAAGGATTGGAGGTGTGGCCTTGTTAGA
GGAAGTGTGTCACTAGGGTACACTTTGAGGTTTCAAAAGCCCATAGCAGG
CCTGGCCTGTCTCTCTTCCTTTTCGTTCCTCTCCCCATCCTCTGCTTATA
GATTAGGATGTGTAGCTCTCAGCCACCTCTCCAACATCATGCTTGCCTGC
AACTGTGCTCCTCGCCATGATGATAAAGGACTAATCGTCTGAACCTGAAA
GCCAGCCTCCAGTTAAATGATTTCTTTTATAAGAGTTTCCTTTGTTAAGA
GAAAATCAGGCAGAATGNGTTGTTCCCCCCCACGCCCCCCCATAGGAATA
AGATAAAGGGTGGGTTATTGAATCCCCCCCCAAAAAAAAAATCGCTTTCT
GTTTTACGATTATTAACACATCCTTGTTTTTTATTCCCCCCTTTTTATTC
CCTACTCTGTTTTATTTTACCCCAGTTTCCCACTCATTTCTGTTTTCCTT
CTATTTTCCCCTTGTCTGTTCCTTTTTCACTCATCTATTTATCATCCCCA
TGGTTTCTCCCCTACCTCCCCCTTATCCCTTTACTATTCCCATCTTCCCT
GTCGCCTTTTCCACCCTTTACTCACTCCCCCCTGACTTTTCCTACGTTCT
TTCTCCCCTTTATCTTTTCCCCTTATCCTATCTCCCTACTATCCATTC
TTCCCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTCCCGAATTCCTTAAGGATAAGCTTAAAT
ATCTTAAATCCTTCAGACAAATCCCTTACACACTAATGAAAGAGCTATCA
AATAGTTCTATAAACTCATATTAAATGTTTTCAACTTTTAGATTTTTCAT
TTATATTAAAACATATAATTAATAAGTTCACACACAAAGCATTCATGTAT
GAACCTGAAAAAAAATGTTAGCCTTACAAAAACTAAGTCCAGCCAGGTAT
GGTGGCACACAACTTTAATCCCAGCACTCATAAGGCATAGGTAGGAGCTA
GAAGCCAGCCCTATTGTTCTACATAGCGAGCCCCAGGATAGCCAAGGATA
CATTTGATACCTTGTCTGAAACAAACCCCCCACTAAACCCCCATAATTTA
CTAAAAGAATACAATCCCACAGAATCACACAAAGAAGAACCATAAAAAAA
AAATCAATCATACTAATTAAACTTATCACATAAACTCATGTGAATTATAG
ATATTCAATTATATACTTTTTTCTTTTAAAAAAATTAAAAAATTACGAGG
CTATCACTCATTTCAGGTTATGTCTTTGTTATGCCAAGCATGCTCGTACC
TGATTCCTTTATCCCCCATTAATCCCCTGTATAAAAAGCTCTTACTGTCT
ATAGGCATTGGCTTTTATGCTTATCAAATTCCCAGCATCTCGGTGTCACG
ATGTCAAAATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_d04.g1 MSMg01no164_d04.g1 CHROMAT_FILE:
MSMg01no164_d04.g1 PHD_FILE: MSMg01no164_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:31:59 2005
         (227 letters)



>mm_chr11_84939186_84939812
          Length = 627

 Score =  422 bits (218), Expect = e-122
 Identities = 221/222 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattccttaaggataagcttaaatatcttaaatccttcagacaaatcccttacacacta 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattccttaaggataagcttaaatatcttaaatccttcagacaaatcccttacacacta 265

                                                                       
Query: 66  atgaaagagctatcaaatagttctataaactcatattaaatgttttcaacttttagattt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 atgaaagagctatcaaatagttctataaactcatattaaatgttttcaacttttagattt 325

                                                                       
Query: 126 ttcatttatattaaaacatataattaataagttcacacacaaagcattcatgtatgaacc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ttcatttatattaaaacatataattaataagttcacacacaaagcattcatgtatgaacc 385

                                                     
Query: 186 tgaaaaaaaatgttagccttacaaaaactaagtccagccagg 227
           |||||||||||| |||||||||||||||||||||||||||||
Sbjct: 386 tgaaaaaaaatgctagccttacaaaaactaagtccagccagg 427


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 227
Length of database: 627
Length adjustment: 9
Effective length of query: 218
Effective length of database: 618
Effective search space:   134724
Effective search space used:   134724
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)