BAC Information

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BAC

Clone NameMSMg01-164D13
Chromosome11 (Build37)
Map Location 98,864,726 - 99,028,793
singlet/doubletdoublet
Overlap geneTop2a, Igfbp4, Tns4, Ccr7
Upstream geneCacnb1, Rpl19, Stac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1
Downstream geneSmarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13, Krt15, Krt19
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-164D13.T7 (MSMg01no164_d13.b1)MSMg01-164D13.TJ (MSMg01no164_d13.g1)
ACCAG362766AG362767
length740740
length of high quality
(start - end)		315 (44 - 358)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no164_d13.b1 PHD_FILE: MSMg01no164_d13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:00 2005CHROMAT_FILE: MSMg01no164_d13.g1 PHD_FILE: MSMg01no164_d13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:32:01 2005
singlet/doubletdoubletdoublet
BLAST hitpluralunique
Map location.(98,864,726 - 98,865,036)(99,028,507 - 99,028,793)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATAAGGATCTCCTCATCTCTGTCTCCCGAGTGCTAGGATTATGATAA
TAACAGTTTTGAAATATTATCTCTTACAAAGTAATGCATACCATAGAGTT
GCAAGTGAGACTACTCTGGAGTTTGAAGACTTTGTGTAGGCCGACTCTCT
CTGCCTCTGCCAGTTTTTCTTCAGTCATCTTTATGACAAACTTCACAGTG
GTATCTGTATGGTATTCCCTATAGTCTGTTATTAGAGAGGGTGTCTTCTC
AGTTCCATTCAACATGGGTTCTAGAACCTGTTCTTTATATGTCTAAAAAA
CAAGAACTTTTTTTTTAACACCCCACCCCCTTGGCAAGGAGTCTCTTAAA
CAGTCAATAACTGCCCCAATATTTTTCTCTTGAAAAACTAAGAAGTCAAT
AGTTACTTACCTGAGTCCACGTTCGGATGGGAAGCTCTGAGATTTCAATG
GTTGTAGAATCCAGAATAGCTACTTCTCCATTAATCACATACTGATTTGA
AGCCAGTTCTTCAATAGTACCTTTGAAATTCTTATAACTTGGGAGCTAAA
TTAATAACAAAAACCTTTATAAATATTTCATCTCANATGTTANACAAACA
AACCTAAACTCTGAAACAAATCTCGTCCTTGTGCCCTATCTTAGCGTCCA
ATCTCCTCAGCTGTGCCTGATGAGAAACAGCTCCAACCCA

ATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXACCTGAATTCATCCATGCCTTCTTCCCCT
GTATGTCTCCATTAGCTCTGCCCCGGCAAACTATCTCCTGTACTTTGCCT
TTTTCTACTTTGAAACAAAAATAAGACCAATCACAGAAGGCTCTGGAATT
TTAGGGTTTGATTTCATTTCCCCCCACCTCCCATTTAAAAGACTGGCTGC
ATCCCCCCTGGAACCCTGTTAGGAAAGGGGATGAAGTGAATTCGGAGGAG
AATCCCACTGGCCTTGCAGCTCCCAGCCGTTCCCATTAAGGAATTCAATG
TCACTAAATTCGATACNGCCCCTANCCGTTGCCCACCAGAGGCACACCTG
GCAGGGTGGCTGACCCCCCCCAAAAAAAAAAAATGATGCTGTGACAAAAC
ACCTGATACAAAGAACCTAGGGAAGGGAAGGTTTATTTGGGCCCTCAAAG
AGAATTCGGCTTAGTGTCACAGGGCTCCAGCTCTGGTGCACCTGAGCAGG
ATCCCATGGTGGCAGAAGCAGAGGAGCGGCCATTTGCTTCATGGATGACA
GGGAAGACGAGGGGAGGGACGCCAACGTTCTGCCTACTCTCCCCTTTCTT
GGTTCAGCCATGGGGAAGAACCCCAGCTTGTGAGCAATACTATTGAGGGT
GCGGCTTTCTTTCTCTGCTAACCTCCTCTGGAAATAGTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no164_d13.b1 MSMg01no164_d13.b1 CHROMAT_FILE:
MSMg01no164_d13.b1 PHD_FILE: MSMg01no164_d13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:00 2005
         (315 letters)



>mm_chr11_98864523_98865237
          Length = 715

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcataaggatctcctcatctctgtctcccgagtgctaggattatgataataacag 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcataaggatctcctcatctctgtctcccgagtgctaggattatgataataacag 263

                                                                       
Query: 64  ttttgaaatattatctcttacaaagtaatgcataccatagagttgcaagtgagactactc 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ttttgaaatattatctcttacaaagtaatgcataccatagagttgcaagtgagactactc 323

                                                                       
Query: 124 tggagtttgaagactttgtgtaggccgactctctctgcctctgccagtttttcttcagtc 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tggagtttgaagactttgtgtaggccgactctctctgcctctgccagtttttcttcagtc 383

                                                                       
Query: 184 atctttatgacaaacttcacagtggtatctgtatggtattccctatagtctgttattaga 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 atctttatgacaaacttcacagtggtatctgtatggtattccctatagtctgttattaga 443

                                                                       
Query: 244 gagggtgtcttctcagttccattcaacatgggttctagaacctgttctttatatgtctaa 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gagggtgtcttctcagttccattcaacatgggttctagaacctgttctttatatgtctaa 503

                      
Query: 304 aaaacaagaac 314
           |||||||||||
Sbjct: 504 aaaacaagaac 514


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no164_d13.g1 MSMg01no164_d13.g1 CHROMAT_FILE:
MSMg01no164_d13.g1 PHD_FILE: MSMg01no164_d13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:32:01 2005
         (287 letters)



>mm_chr11_99028307_99028993
          Length = 687

 Score =  516 bits (267), Expect = e-151
 Identities = 282/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   acctgaattcatccatgccttcttcccctgtatgtctccattagctctgccccggcaaac 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 487 acctgaattcatccatgccttcttcccctgtatgtctccattagctctgccccgacaaac 428

                                                                       
Query: 61  tatctcctgtactttgcctttttctactttgaaacaaaaataagaccaatcacagaaggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tatctcctgtactttgcctttttctactttgaaacaaaaataagaccaatcacagaaggc 368

                                                                       
Query: 121 tctggaattttagggtttgatttcatttccccccacctcccatttaaaagactggctgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tctggaattttagggtttgatttcatttccccccacctcccatttaaaagactggctgca 308

                                                                       
Query: 181 tcccccctggaaccctgttaggaaaggggatgaagtgaattcggaggagaatcccactgg 240
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 307 tcccccctggaaccctgttaggaaaggggatgaagtgaattcagaggagaatcccactgg 248

                                                          
Query: 241 ccttgcagctcccagccgttcccattaaggaattcaatgtcactaaa 287
           ||||||||||||| ||| ||| |||||||||||||||||||||||||
Sbjct: 247 ccttgcagctccccgccattctcattaaggaattcaatgtcactaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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