BAC Information

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BAC

Clone NameMSMg01-165C12
Chromosome11 (Build37)
Map Location 88,255,907 - 88,256,595
singlet/doubletsinglet
Overlap geneMsi2
Upstream geneTex14, Sept4, Mtmr4, Hsf5, Rnf43, Supt4h1, Bzrap1, Mpo, Lpo, Mks1, Epx, Olfr462, Olfr463, Olfr464, Dynll2, Sfrs1, Vezf1, Cuedc1, Mrps23, 1700106J16Rik, LOC668793
Downstream geneLOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165C12.T7 (MSMg01no165_c12.b1)MSMg01-165C12.TJ (MSMg01no165_c12.g1)
ACCAG363400AG363401
length7451,197
length of high quality
(start - end)		693 (40 - 732)---
definitionCHROMAT_FILE: MSMg01no165_c12.b1 PHD_FILE: MSMg01no165_c12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:13 2005CHROMAT_FILE: MSMg01no165_c12.g1 PHD_FILE: MSMg01no165_c12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TGCAGTAACCCCACAGAGGTATATCAGTGCCCTGTCTTCTGCCCGAAGGT
AGTATGCATACCCAGAGCCTGAGTGGTGGGTGTCTCTGCTGCTGGGAACC
TCAGCTTACCTCCGGAAACTCTTTTTCTGTCATCATGTCTGTACCTGGCA
GACAAGCTGAAAGGTCAGTTCTGGGTGGAACCTGGGTGCAAAGGATGCAG
CAAGAGCCCACCAGGTCTCTGAGAAGGAGGTGAGAATGAGGCTAGAGCTA
GCTAGATCCTAGAGCTAGCTGCCTGGGGGTGGAGAGGAAATGCTGTATGA
GAGGCTAAGTGTGTTACAGCTGTTGTGTAAATGCTTGTTGGAATGATCTG
TGGTGATATGAAACTATGACTCAAGACTGGGATCTTGAGAAGGACCCCCC
CCCATGCCCCCCCTCAGACATTTGCCCTTCCATCATCCTATGGCTTTGAC
CCTTTCCAGCTCCCAAATCTCCCTCTCTGGTCAATAAATAGCAAAGATTG
CAGCGCCTCTACTGACTAGAGAAGTCAATAGAAGGCGGTACCCCACCCCC
ACCCCACAGGCCCTCGCAGTAGGAAGTAATTGCATCCCTCTGACTCCAGA
GCTTTCTTGGTGGCTTTTCATGACCCAGCTCCTAACAGTTGACACCTAAC
TGCAGCCACCGATCTCTCTTCTCCCTGAGATGAGGAAGGTGCCTA

NNGGTTAANNNNNNAAGATGCGAGCCTGGGGXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCGGTCCTGGATGCTTTACTAG
GTCTAAATTCCTTTTTCCTGACCTCCTGAAGCGAAGACCTAGGTCCAGCA
GTTCTAATCCCCTAAGAGATATGGGAGGGCAGGTGGAATGGCAAGGCCTG
ACTGGGACTTCCTGGCTTAGGGGAACACGCCAGAACTTACAGATCCATGT
GACTTGTGGCCCTGAAGGCTCAGGAGGCCACTAGGCCTTGGTGACAGCAT
CAGCTTTCAGTTTCCTGTGGCTCCTAGAAAAAGGGGACTATGACGTCATC
TTCCCAGTGGTCCTGGGAAGCACACTGGAGCGTCATTCAGCAACACCAGA
GGAACTGAGAAAATGCTCTCAGTGCTGGCCTTGCCACTTTTGTGTCACAG
CAATGGCTGTGACTTTTGCCATCCCCTGTGTGAAACAAAGTGGCAGAAAA
TGAGAGACAGGAAGGGAGAGGCCGGAAGCGGGGGAGAGACAGCAGAGGAG
GAGACCAGAAGAGACACACCCTTTCGTTCTCTCTTCTACCAATCTGGGAA
ATATTTATTGATGGAGAACCCAACAGGCCCAAGGCCCTAGTTAAATACCC
CACCAGACCCCAGCTGCTCCCTTCTGCTCCCCTCCCCCCCCCCTCTTAGG
TGGAATTCCCCGGCTGCGGTTTCTCCGAAGGCCCGTAGGTGTCCATGTGT
CCGCACAAAAGCTAGGGGTGCCCGGCATTTGAGAGCCCCCTATGAACCGA
AATTCCCTTTCTTCTGACTACCCCTGTTTGTGGGGCCCCCCGGCCCGACC
CCTTGACGGGTAAACCCGCTAAGGGACTCCCCAAATTCTCCGGTTTGCCC
CAACTTTACCCCGCCCCCCCACCCCCGGTTAGCACCCCCCCCCCCCCCTT
TTTCACAACCCCACCGCCACACCCATCCTCTCGCCACCCCCCTCTCCCCC
CCCCTCCCCCCCCCCCCCTTCCCCTCCCCCCTTCCCCCCCCCCCCTCCCC
CCCCCCTCCTCCCCCTCCCCCCCTCCTCCCCCCTACTCTCCCCTCCCCCC
TCCCCTCCCCTCCCCCTTTCTCCCCCCTTCTCCTCCCTTCCCTCCCTCCC
CTCTTCCCCTTCACCTTCCACTCTCTCCCCATCCTCCTCCTCAGCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_c12.b1 MSMg01no165_c12.b1 CHROMAT_FILE:
MSMg01no165_c12.b1 PHD_FILE: MSMg01no165_c12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:13 2005
         (693 letters)



>mm_chr11_88255703_88256795
          Length = 1093

 Score = 1332 bits (689), Expect = 0.0
 Identities = 689/689 (100%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctgcagtaaccccacagaggtatatcagtgccctgtcttctgcccgaaggtagt 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 893 gaattcctgcagtaaccccacagaggtatatcagtgccctgtcttctgcccgaaggtagt 834

                                                                       
Query: 65  atgcatacccagagcctgagtggtgggtgtctctgctgctgggaacctcagcttacctcc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 833 atgcatacccagagcctgagtggtgggtgtctctgctgctgggaacctcagcttacctcc 774

                                                                       
Query: 125 ggaaactctttttctgtcatcatgtctgtacctggcagacaagctgaaaggtcagttctg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 ggaaactctttttctgtcatcatgtctgtacctggcagacaagctgaaaggtcagttctg 714

                                                                       
Query: 185 ggtggaacctgggtgcaaaggatgcagcaagagcccaccaggtctctgagaaggaggtga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 ggtggaacctgggtgcaaaggatgcagcaagagcccaccaggtctctgagaaggaggtga 654

                                                                       
Query: 245 gaatgaggctagagctagctagatcctagagctagctgcctgggggtggagaggaaatgc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gaatgaggctagagctagctagatcctagagctagctgcctgggggtggagaggaaatgc 594

                                                                       
Query: 305 tgtatgagaggctaagtgtgttacagctgttgtgtaaatgcttgttggaatgatctgtgg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tgtatgagaggctaagtgtgttacagctgttgtgtaaatgcttgttggaatgatctgtgg 534

                                                                       
Query: 365 tgatatgaaactatgactcaagactgggatcttgagaaggacccccccccatgccccccc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 tgatatgaaactatgactcaagactgggatcttgagaaggacccccccccatgccccccc 474

                                                                       
Query: 425 tcagacatttgcccttccatcatcctatggctttgaccctttccagctcccaaatctccc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tcagacatttgcccttccatcatcctatggctttgaccctttccagctcccaaatctccc 414

                                                                       
Query: 485 tctctggtcaataaatagcaaagattgcagcgcctctactgactagagaagtcaatagaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tctctggtcaataaatagcaaagattgcagcgcctctactgactagagaagtcaatagaa 354

                                                                       
Query: 545 ggcggtaccccacccccaccccacaggccctcgcagtaggaagtaattgcatccctctga 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 ggcggtaccccacccccaccccacaggccctcgcagtaggaagtaattgcatccctctga 294

                                                                       
Query: 605 ctccagagctttcttggtggcttttcatgacccagctcctaacagttgacacctaactgc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctccagagctttcttggtggcttttcatgacccagctcctaacagttgacacctaactgc 234

                                        
Query: 665 agccaccgatctctcttctccctgagatg 693
           |||||||||||||||||||||||||||||
Sbjct: 233 agccaccgatctctcttctccctgagatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 693
Length of database: 1093
Length adjustment: 10
Effective length of query: 683
Effective length of database: 1083
Effective search space:   739689
Effective search space used:   739689
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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