BAC Information

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BAC

Clone NameMSMg01-165G09
Chromosome11 (Build37)
Map Location 92,032,510 - 92,033,196
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664976, Kif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165G09.T7 (MSMg01no165_g09.b1)MSMg01-165G09.TJ (MSMg01no165_g09.g1)
ACCAG363571AG363572
length739780
length of high quality
(start - end)
691 (40 - 730)248 (70 - 317)
definitionCHROMAT_FILE: MSMg01no165_g09.b1 PHD_FILE: MSMg01no165_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:32 2005CHROMAT_FILE: MSMg01no165_g09.g1 PHD_FILE: MSMg01no165_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:32 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
AGCATTCTCCCAGAGCTGAAATTTGGTTTTCCTGGTATTTTGGCCCAAGT
GTATTTCCTTGACCTACAATTGCATATTAGCTGTATCTTTTGCCTACCAG
TAACAGACCTTGAGGTTCTTAGACAGCAGATTTACATAAGTGAGATGCTT
GTGTTTAAGAATTTCTTCTTCCCATCTCCATCTACTCCCCAGAACTAAGG
CTGTCCCACAGCCCTCTGAACCCAAATCCTGGTCAGAGAGAGCTTGTCTC
CAAGGTGTGCTCTCACTCCTAAGCACACTAGGGAGATCATTACCTTTGTT
CTAATAACTGTCCAAATAGGGACCTGCCAGGAGTGCACAGGGCACAGGAT
ATGCAAAGCACACCGGAACAGGATCCTTCCAGTCTCCATCTGTGCCCTTG
AGCTGAGGCTGTCCCACAGCCCACCATACTCAAATTCCTCCTAGAGAGAG
CTGTTTCCCCAGGAGTGTTGACATACCTAAGATCACAGGCTCACAGGCTC
ACAGGCCCACAGGAGGGACAAGCTCCAGTCAGAGACAGCAAGACCAACCA
ACACCAGAGATCCAATGGTGACAGACAAGAGCAACAACCTAAGCAACAGA
AATCAAGTCTACTTGGCATCATCAGAATGCAGTTCTCCCACCACAGTAAG
TCCTGGATATGCCAACAAAATGGAGAAGCAAGATTTACN
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTCATCTTTCCAAGACTTTATTATGAATGGG
TGTTGGATCTTGTCGAATGCTTTTTCAGCATCTAACGAGATGATCATGTG
GTTTTTGTCTTTGAGTTTGTTTATATAATGGAATATGTTGATGGATTTCC
GTATATTAAAACATCCCTGCATCCCTGGAATAAAACCTACTTGGTAAGGA
TGGATGATTGCTTTAATGTGTTCTTAGATTCGTTTACAAAGAATATTATT
GAGTAGTTTTGCATCTATTTTCTTAAGGGAAATTGATCTGAAGTTCTCTA
TCTTTGTTGGATCTTTCTGATTGCGAGGTATTAGAGTAATTGTGTCGTCA
TATATTGTGCCCCCCCCAGAACCTTGTACTTTTATTTTGCGCAATACATT
TGTGTGATCTGTATTTTCACACTTCTCTCGACGGTCTACCTATACCTCTG
AATTTATTTTAACCGGTTCCTGTTTTCCTCTTTGTTTTGTATTATCACTA
TCGTCATTTTTACCCTTCCTTTAGGTTACCTCGTTTTTTCCTTTATACTC
CTCCAGTTTTCCTTCTTTTTCTCTCTTTTCCTTCTTACTACTTTCCCTTT
CTTCTCTTTTTTTATTTTCCTTTTTTTCCCCCATCCTTTTCCCTACCATC
CCTCTTCCTTTTCTCTCCTCCCCCCCCTACCCTCCACTTTTTCCCTCTCT
CCATCATTCATTTCCTATTTCTCATCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_g09.b1 MSMg01no165_g09.b1 CHROMAT_FILE:
MSMg01no165_g09.b1 PHD_FILE: MSMg01no165_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:32 2005
         (691 letters)



>mm_chr11_92032306_92033396
          Length = 1091

 Score = 1290 bits (667), Expect = 0.0
 Identities = 682/687 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccagcattctcccagagctgaaatttggttttcctggtattttggcccaagtgta 64
           ||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccagcattcagacagagctgaaatttggttttcctggtattttggcccaagtgta 264

                                                                       
Query: 65  tttccttgacctacaattgcatattagctgtatcttttgcctaccagtaacagaccttga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tttccttgacctacaattgcatattagctgtatcttttgcctaccagtaacagaccttga 324

                                                                       
Query: 125 ggttcttagacagcagatttacataagtgagatgcttgtgtttaagaatttcttcttccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggttcttagacagcagatttacataagtgagatgcttgtgtttaagaatttcttcttccc 384

                                                                       
Query: 185 atctccatctactccccagaactaaggctgtcccacagccctctgaacccaaatcctggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atctccatctactccccagaactaaggctgtcccacagccctctgaacccaaatcctggt 444

                                                                       
Query: 245 cagagagagcttgtctccaaggtgtgctctcactcctaagcacactagggagatcattac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cagagagagcttgtctccaaggtgtgctctcactcctaagcacactagggagatcattac 504

                                                                       
Query: 305 ctttgttctaataactgtccaaatagggacctgccaggagtgcacagggcacaggatatg 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctttgttctaataactgtccaaatagggacctgccaggagtgcacagggcacaggatatg 564

                                                                       
Query: 365 caaagcacaccggaacaggatccttccagtctccatctgtgcccttgagctgaggctgtc 424
           ||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 caaagcagactggaacaggatccttccagtctccatctgtgcccttgagctgaggctgtc 624

                                                                       
Query: 425 ccacagcccaccatactcaaattcctcctagagagagctgtttccccaggagtgttgaca 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ccacagcccaccatactcaaattcctcctagagagagctgtttccccaggagtgttgaca 684

                                                                       
Query: 485 tacctaagatcacaggctcacaggctcacaggcccacaggagggacaagctccagtcaga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tacctaagatcacaggctcacaggctcacaggcccacaggagggacaagctccagtcaga 744

                                                                       
Query: 545 gacagcaagaccaaccaacaccagagatccaatggtgacagacaagagcaacaacctaag 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gacagcaagaccaaccaacaccagagatccaatggtgacagacaagagcaacaacctaag 804

                                                                       
Query: 605 caacagaaatcaagtctacttggcatcatcagaatgcagttctcccaccacagtaagtcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 caacagaaatcaagtctacttggcatcatcagaatgcagttctcccaccacagtaagtcc 864

                                      
Query: 665 tggatatgccaacaaaatggagaagca 691
           |||||||||||||||||||||||||||
Sbjct: 865 tggatatgccaacaaaatggagaagca 891


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 691
Length of database: 1091
Length adjustment: 10
Effective length of query: 681
Effective length of database: 1081
Effective search space:   736161
Effective search space used:   736161
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)