MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-165G18
Chromosome	11 (Build37)
Map Location	47,026,760 - 47,027,294
singlet/doublet	singlet
Overlap gene	Sgcd
Upstream gene	Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4
Downstream gene	LOC628753, LOC100039647
Link	Open Mouse BAC browser

Click to get alignment info.

name	Cyfip2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:76884 MGI:1924134
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C030019I05Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:320116 MGI:2443410
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100038833 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100038833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039577 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039577
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Itk (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:16428 MGI:96621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	OTTMUSG00000005491 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432552 MGI:3650836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Crsp9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:66213 MGI:1913463
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039730 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 3 Proteins pseudo : _no_value

name	Havcr2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171285 MGI:2159682
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC210535 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:210535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein

name	LOC675689 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675689
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	LOC435256 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:435256
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins pseudo : _no_value

name	BC053393 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:407814 MGI:3039605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dppa1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:347708 MGI:2157522
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG237749 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:237749 MGI:3646427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins

name	Timd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171284 MGI:2159681
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC620678 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 747 ESTs, 11 Proteins pseudo : _no_value

name	Havcr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171283 MGI:2159680
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Timd4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:276891 MGI:2445125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Sgcd (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24052 MGI:1346525
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC628753 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:628753
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 8 Proteins pseudo : _no_value

name	LOC100039647 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039647
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	Cyfip2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370255 GeneID:76884 MGI:1924134
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cytoplasmic FMR1 interacting protein 2 transcript_id : NM_133769.2

name	C030019I05Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802268 GeneID:320116 MGI:2443410
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA C030019I05 gene transcript_id : NM_177075.3

name	LOC100038833 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261846 GeneID:100038833
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hypothetical protein LOC100038833 transcript_id : XM_001471943.1

name	Itk (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:119703750 GeneID:16428 MGI:96621
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : IL2-inducible T-cell kinase transcript_id : NM_010583.2

name	OTTMUSG00000005491 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:62000655 GeneID:432552 MGI:3650836
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : predicted gene, OTTMUSG00000005491 transcript_id : NM_001013783.1

name	Crsp9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31981285 GeneID:66213 MGI:1913463
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cofactor required for Sp1 transcriptional activation, subunit 9 transcript_id : NM_025426.2

name	Havcr2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21703359 GeneID:171285 MGI:2159682
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatitis A virus cellular receptor 2 transcript_id : NM_134250.1

name	LOC210535 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94390063 GeneID:210535
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 ESTs, 1 Protein product : hepatitis A virus cellular receptor 1-like transcript_id : XM_109910.4

name	LOC675689 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149261859 GeneID:675689
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : similar to DPPA1 transcript_id : XM_001473179.1

name	BC053393 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802650 GeneID:407814 MGI:3039605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC053393 transcript_id : NM_001025435.2

name	Dppa1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342425 GeneID:347708 MGI:2157522
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : developmental pluripotency associated 1 transcript_id : NM_178247.2

name	EG237749 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149261861 GeneID:237749 MGI:3646427
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins product : predicted gene, EG237749 transcript_id : XM_111219.7

name	Timd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142386346 GeneID:171284 MGI:2159681
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell immunoglobulin and mucin domain containing 2 transcript_id : NM_134249.4

name	Havcr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527409 GeneID:171283 MGI:2159680
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : hepatitis A virus cellular receptor 1 transcript_id : NM_134248.1

name	Timd4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110624775 GeneID:276891 MGI:2445125
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : T-cell immunoglobulin and mucin domain containing 4 transcript_id : NM_178759.4

name	Sgcd (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142377675 GeneID:24052 MGI:1346525
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : sarcoglycan, delta (dystrophin-associated glycoprotein) transcript_id : NM_011891.3

name	Cyfip2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370256 CCDS:CCDS24573.1 GeneID:76884 MGI:1924134
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0019717 - synaptosome [Evidence ISS] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : cytoplasmic FMR1 interacting protein 2 protein_id : NP_598530.2

name	C030019I05Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:28892985 CCDS:CCDS24574.1 GeneID:320116 MGI:2443410
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 product : hypothetical protein LOC320116 protein_id : NP_796049.1

name	LOC100038833 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261847 GeneID:100038833
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001471993.1

name	Itk (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:119703751 CCDS:CCDS24575.1 GeneID:16428 MGI:96621
definition	GO_function : GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004713 - protein-tyrosine kinase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006468 - protein amino acid phosphorylation [Evidence IEA] codon_start : 1 note : interleukin-2-inducible T cell kinase product : IL2-inducible T-cell kinase protein_id : NP_034713.2

name	OTTMUSG00000005491 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:62000656 CCDS:CCDS24576.1 GeneID:432552 MGI:3650836
definition	codon_start : 1 product : hypothetical protein LOC432552 protein_id : NP_001013805.1

name	Crsp9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981286 GeneID:66213 MGI:1913463
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence ISS] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0003713 - transcription coactivator activity [Evidence IEA]; GO:0030528 - transcription regulator activity [Evidence ISS] GO_process : GO:0045941 - positive regulation of transcription [Evidence IEA]; GO:0006357 - regulation of transcription from RNA polymerase II promoter [Evidence ISS]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : cofactor required for Sp1 transcriptional activation, subunit 9, 33kDa product : cofactor required for Sp1 transcriptional activation, subunit 9 protein_id : NP_079702.2

name	Havcr2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21703360 GeneID:171285 MGI:2159682
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : T-cell immunoglobulin and mucin domain containing 3 product : hepatitis A virus cellular receptor 2 protein_id : NP_599011.1

name	LOC210535 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:20347292 GeneID:210535
definition	codon_start : 1 product : hypothetical protein LOC210535 protein_id : XP_109910.1

name	LOC675689 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149261860 GeneID:675689
definition	codon_start : 1 product : similar to DPPA1 protein_id : XP_001473229.1

name	BC053393 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70887609 CCDS:CCDS24580.1 GeneID:407814 MGI:3039605
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC407814 protein_id : NP_001020606.1

name	Dppa1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30142691 CCDS:CCDS24581.1 GeneID:347708 MGI:2157522
definition	codon_start : 1 product : developmental pluripotency associated 1 protein_id : NP_839978.1

name	EG237749 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149261862 GeneID:237749 MGI:3646427
definition	codon_start : 1 product : similar to TIM1 protein_id : XP_111219.7

name	Timd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:34328516 CCDS:CCDS24582.1 GeneID:171284 MGI:2159681
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : T-cell immunoglobulin and mucin domain containing 2 protein_id : NP_599010.3

name	Havcr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527410 CCDS:CCDS24583.1 GeneID:171283 MGI:2159680
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA] codon_start : 1 exception : mismatches in translation note : T-cell immunoglobulin and mucin domain containing 1 product : hepatitis A virus cellular receptor 1 protein_id : NP_599009.1

name	Timd4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110624776 GeneID:276891 MGI:2445125
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : smuckler product : T-cell immunoglobulin and mucin domain containing 4 protein_id : NP_848874.3

name	Sgcd (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755484 CCDS:CCDS24584.1 GeneID:24052 MGI:1346525
definition	GO_component : GO:0005856 - cytoskeleton [Evidence IEA]; GO:0005887 - integral to plasma membrane [Evidence TAS]; GO:0016020 - membrane [Evidence IEA]; GO:0016012 - sarcoglycan complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA]; GO:0016044 - membrane organization and biogenesis [Evidence TAS] codon_start : 1 note : sarcoglycan, delta (35kD dystrophin-associated glycoprotein); sarcoglycan delta (dystrophin-associated glycoprotein) product : sarcoglycan, delta (dystrophin-associated glycoprotein) protein_id : NP_036021.1

name	LOC100039577 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039577
definition	number : 2 pseudo : _no_value

name	LOC100039577 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039577
definition	number : 1 pseudo : _no_value

name	LOC435256 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:435256
definition	number : 1 pseudo : _no_value

name	LOC100039647 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100039647
definition	number : 1 pseudo : _no_value

name	LOC100039730 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261866 GeneID:100039730
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 37 ESTs, 3 Proteins product : hypothetical protein LOC100039730 pseudo : _no_value transcript_id : XR_031448.1

name	LOC620678 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261868 GeneID:620678
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 747 ESTs, 11 Proteins product : similar to 60S ribosomal protein L7 pseudo : _no_value transcript_id : XR_031536.1

name	LOC628753 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149261869 GeneID:628753
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 119 ESTs, 8 Proteins product : similar to hCG2016250 pseudo : _no_value transcript_id : XR_031591.1

clone name	MSMg01-170O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449O05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-152J06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-387K23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290D24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-453H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-518N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-158K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380B17
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-290L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-382D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-270O02
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-377H05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-118B03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057H04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-356J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457C12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303L20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-271K23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-134D16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-338D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-192O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-218I13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-483B11
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-193P04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-333M07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-096K03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C18
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-063K05
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-211H14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-313O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-495O06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-186C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537D10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-417J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-493B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-467J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-494M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-289O18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-515N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268N10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-073B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179J17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345O18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-342O14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454H06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-482G11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-302B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184E12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-165G18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-471I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087H23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-183C09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-346M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-381J02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-377D13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-482F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-510D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-454K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-125P11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-487D02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-204C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-140K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371J16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374B19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-443K05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351C19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-396N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458M10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539I10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-065N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173G10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-464H11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-451L06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-111P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209E07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-158C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-411K09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-198E02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-370F06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-095A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-410H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-088L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196J19
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-064N14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-130J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-445I11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467J18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-272F18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-358L10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136L17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-305N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-189F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279L21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-094H17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-531M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317K18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-076E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-201G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-224M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273A23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299E24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-257O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-185F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-221F17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169D08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-040A20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140J11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-181L16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-112M24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024N02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-074F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269M02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-035N09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-265E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-172B23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030O04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218P21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330H03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241A07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-023E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053P10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-153L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255M10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263G06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321K18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-077E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-329J18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-061H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-214P13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231M15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183K16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-045G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096L01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-160G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-051D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-110M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-118P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112H13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-349H11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-018G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-033C16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003H02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296H02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087H03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-176P03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-055N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-246F08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-079C09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-193D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-025J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-306L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-007I04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-048P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-080J14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122E10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-038I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-319D08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-162D09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295L14
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-165G18.T7 (MSMg01no165_g18.b1)	MSMg01-165G18.TJ (MSMg01no165_g18.g1)
ACC	AG363587	AG363588
length	759	1,220
length of high quality (start - end)	644 (34 - 677)	61 (139 - 199)
definition	CHROMAT_FILE: MSMg01no165_g18.b1 PHD_FILE: MSMg01no165_g18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:34 2005	CHROMAT_FILE: MSMg01no165_g18.g1 PHD_FILE: MSMg01no165_g18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:34 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXTCCGAGAATCCGCGGAATTCATCCAC TCCTGGCAACATTTATAAATCTGGGGAAAAGCTTCAAAATTCATTGCTGC CCAGGGCTCTGGTAGAAAATTTAATTAACAATAAAGATGATAATAGTGAC TTTTAATGTTTCAGTGTATTTTATTTTTTATCTAGTAGTTTTTCAAAATA TGTCAATACCTTTAATCCATGCCATCTATTGCTTCAGCTGTATTCTAAAC AATCTCCCTTTTTGTGTGGAATTATATTCTAGCAAAGTTAGCAACCACAT ACAAGTGAATCAAAACTGGAATGAGAGCTCACTGTTGCTAGAGAGATTGA AGGAGAGCTTCTGGTCTCAGAGAAGTCAGTGAAGGGCTTGTGCACAGTAT TTGAGCTACGACCTTAGTTAACTGAAGGGGTCAGCTATGCAGAGAGCAAA GAACATTTGAGGCACAGGAAACAGTAGATACAAATGTCTTAAGGGTGGAC CCCTTTGGTTATGCTCCAAGGAACAGCAAACAACTGGAATAGAAATGTGG TCTTTCCTTCTAGCCCCCAAGATAAAAAAAAAAAAACACCTCTATTTTAG TATATATAACATGAATCAGGCTATGGCAATTTAGAAATAGCTAGTCTCAG ACGTGTGACAATGAGGGAGAATTAAGTCACCCCAAGGTTGAGGAAAGAAA TTAGCACTAATCACAGTTGACTTTCTGTCACACCCCTATTAATTGCTCCC CTACTCCTG	AAGTCCCTNNNNAAAGACGGTAGCTGGGGCGCCGGNGCTGAXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTCCGTTCTGAGCCCCATTTT TTAATGGGGTTATTTGATTTTCCGGAGCTCCCCCTTCTTGAGTTCTTTAT ATATGTTGGATATAAGTCCCCCTATCTGATTTGGGATAGGTAAAGATCCC TTTCCCAATCTGTTGGTGGGGCTTTTTGTCTTATTGACGGTGTCTTTTGC CTTGCAGAAGCTTTGCAATTTTCGAAGTAAATGGTGAGAAGCTGGAAGCC ATCCCCTAAAATCAGGGACCTAGACAGACTGTCTACTCTCTCCCTACCTA CTCAACATTGTACTTGAAGTCCTAGCCCGAGCAATTAGACAACATTTGGA GATCCAGGAGATACCAATTGGATAGGAGGAAGTCAAAATATCACTTTTTG CAGATGATATGATAGTATATATAAGTGACTCTAAAAATTCCACCAGAGAA CTCCTAAGTCTGATAAACAGCTCTCATGAAGTAGCTGGATATAAAATTAA CTCCCACAAGTCCATGGTATTTCCGTACCCCAAGGATAAACAGGCTGACA AAGAAGTTAGAGAACACCCCCCCTTCCTCCCTAGTCCTAACGAACATCAC ATACCTTGGTGTGCCTCTAACTAAGGAACTGAAAGATCTGCATGACCCGA CACTCCCCGTCTCTGAACCAAGAACTCATAGACCATCTCCCAACACGGAC CACATCCCCCCTGCCTCCCGCATTCGCCCCCTCCCCCTTTGTAACACCGG CTCTCCTTGCCCACTCCCCCCTACCCACCCCCTCGCCCTCTCCCCTCCTC CCTTTCCACTCCCCTCGCTTCCCCCCACTTTCCCCCCTTCTCCCTCCTCC CCTCTCCCTCTTCCCCCTCCCCCCCTCCTCTCTCTCCCCCTCCTCTCTTC TTCTCCCCCTTTCCACCTCTCCCCCGCTGCCCTTCTCTCTCCCCCCCCTC TGCACTCCCCCTTCCTCCCCCCCCCTCTCCCCTCTCTCCCCCCCCTCNTC TCTCCTCCCCTCCCCCTCTCCCCCCCCCCTCCTTCCTCCCCCCTCCTCCC CTCCTCCCCCGCTCTCCCCCCCCTCCCCTCCCCTCCCTCTCCCCTCTCCC CTCCCTCTCCCTCCTACCCCCCCCCTGTCTCCTCTTCCTCTCTCTCCCAT CCCTCCCCCTCCCTCTCCCC
quality values	Open. Hide. 12 12 25 21 29 19 16 10 8 8 8 21 21 48 31 28 28 28 28 30 23 23 9 9 9 14 11 11 10 9 9 9 12 12 21 25 41 37 36 36 36 36 50 36 36 33 33 37 37 37 37 37 23 15 7 7 7 8 10 21 28 33 33 50 50 48 50 50 53 50 50 50 53 53 53 57 57 57 53 53 53 53 53 53 53 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 51 51 48 48 68 68 68 68 68 68 59 59 54 54 54 48 50 50 50 50 51 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 50 68 68 68 68 68 68 68 68 51 51 51 51 50 50 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 43 35 43 43 43 43 43 43 50 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 59 59 59 59 59 59 59 59 57 57 57 57 57 53 59 59 59 59 59 30 28 15 15 12 11 11 12 23 30 32 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 54 54 54 54 68 68 57 68 68 68 68 68 68 68 68 68 68 54 57 57 59 54 57 57 57 57 57 50 50 57 50 50 50 57 57 57 59 57 57 48 57 48 48 59 59 59 59 59 59 59 59 44 37 37 44 44 44 59 37 37 37 37 37 47 59 57 57 53 53 50 50 50 53 53 57 57 50 50 48 48 42 47 54 54 54 54 57 57 57 59 57 57 57 57 68 68 68 57 48 48 48 48 48 57 47 47 47 47 47 47 57 59 59 59 59 59 59 50 47 47 42 39 39 41 41 37 37 44 44 44 47 47 47 47 48 48 48 48 50 50 50 50 50 47 59 57 40 40 36 36 36 43 43 48 48 48 48 57 43 47 47 37 37 28 37 37 48 48 40 41 40 39 41 44 43 37 34 39 39 39 36 37 41 41 43 41 34 29 37 29 31 37 34 34 23 23 16 25 22 28 25 28 30 30 36 36 30 19 28 21 13 13 12 18 18 20 22 25 25 37 32 29 34 37 39 35 31 31 34 37 30 31 24 22 20 18 14 10 10 10 10 17 24 28 14 14 14 25 25 39 43 43 32 28 31 36 31 35 36 22 15 15 17 22 16 21 15 21 24 32 25 25 30 24 24 24 24 24 33 29 21 14 10 10 11 12 20 21 13 13 10 12 12 19 15 30 30 20 17 17 14 13 13 14 13 12 10 10 9 11 17 22 9 12 8 8 8 8 8 11 8	Open. Hide. 9 9 9 9 8 8 8 3 0 0 0 0 3 9 9 9 7 9 6 6 6 6 6 6 6 7 10 8 17 11 9 9 9 9 3 0 3 11 11 14 16 28 24 24 30 30 36 36 26 26 13 10 9 9 18 21 21 37 37 41 41 44 34 21 8 6 6 6 8 8 11 20 18 12 9 9 17 21 19 19 10 10 10 17 17 21 11 11 17 19 21 26 17 21 12 17 17 30 41 39 44 44 44 37 37 47 47 47 21 21 9 11 11 21 24 37 36 47 47 25 21 10 10 10 12 9 10 10 11 10 10 11 11 17 23 21 12 12 15 25 25 39 27 27 11 11 12 25 25 37 37 37 37 50 48 59 59 59 50 50 42 47 40 37 37 37 32 29 30 22 23 18 19 19 28 21 18 20 36 41 48 47 43 59 43 57 53 53 50 50 50 50 42 47 41 31 28 15 15 20 19 23 22 15 8 6 6 8 19 15 22 19 33 41 41 18 15 13 17 13 14 15 21 21 27 28 32 17 28 22 30 30 36 48 31 28 22 12 10 8 14 20 9 9 11 20 27 30 21 15 13 16 15 22 12 10 10 19 19 20 21 22 20 19 15 8 8 8 22 28 21 17 8 8 8 21 25 41 36 36 36 37 37 35 35 43 47 59 36 19 19 10 10 10 20 28 24 22 13 10 10 17 17 11 12 10 19 19 31 33 27 24 18 18 18 19 22 10 8 8 8 8 15 14 19 19 23 23 22 20 19 15 11 10 18 13 14 20 20 20 24 24 28 24 24 19 28 24 22 20 17 15 8 8 8 8 8 16 23 37 25 27 24 24 28 28 46 37 37 19 19 10 10 10 18 13 10 11 13 16 11 11 11 16 24 31 37 18 14 10 10 8 8 8 8 9 13 15 15 13 16 15 8 7 7 8 16 24 34 34 30 23 16 10 10 10 17 18 28 15 21 13 13 13 10 9 8 8 8 8 11 9 10 10 10 10 26 32 30 13 13 8 8 8 12 17 28 28 13 8 8 8 8 10 28 28 28 32 32 37 39 37 30 30 18 18 11 16 16 30 18 18 15 18 13 12 8 8 6 6 8 8 17 14 28 34 32 37 16 13 9 9 9 9 10 11 22 17 17 9 9 9 17 12 12 9 13 8 8 7 10 12 27 24 28 24 19 13 12 15 13 6 6 6 8 10 18 26 16 9 9 9 9 9 9 10 10 15 15 26 26 23 23 20 20 15 24 19 13 11 8 14 14 8 8 8 8 10 12 13 10 13 13 14 12 11 8 7 7 8 15 10 10 10 10 8 11 8 8 8 8 11 12 13 11 11 11 15 10 12 8 8 8 10 11 11 18 15 21 24 28 20 18 15 13 13 11 16 13 13 13 10 10 6 6 6 8 8 8 8 8 8 10 10 9 12 12 12 12 13 19 23 28 19 18 18 18 13 10 10 10 10 10 16 18 10 11 6 6 8 10 9 9 10 10 10 11 12 11 12 11 12 10 12 9 13 13 10 10 10 10 10 10 10 11 11 10 10 10 10 10 11 12 11 11 11 17 8 8 8 8 8 8 10 15 9 12 9 8 8 6 6 8 8 10 10 8 13 12 12 10 10 10 9 9 10 10 9 9 9 9 9 11 15 12 11 9 9 9 6 8 6 6 8 8 8 8 6 6 10 17 15 10 10 8 8 8 8 8 8 8 8 8 8 9 8 8 8 8 11 8 9 9 9 9 10 10 10 10 9 10 8 8 13 12 11 10 9 9 10 10 7 6 8 8 9 9 10 10 10 10 9 9 9 9 8 8 6 6 6 6 9 10 10 10 9 9 9 9 9 10 9 9 9 10 12 13 15 14 10 9 9 9 9 8 8 8 8 8 8 12 9 8 8 8 9 9 8 10 10 6 6 8 8 10 11 10 10 13 10 12 10 9 9 9 10 8 10 10 8 8 8 10 8 8 6 6 6 8 8 8 12 12 12 10 8 8 8 8 8 8 8 12 10 10 6 7 6 8 8 8 8 10 15 15 10 9 9 9 12 10 8 8 7 6 13 8 8 8 8 8 8 7 7 10 8 8 6 7 12 8 10 12 15 9 9 9 10 10 8 8 8 12 8 10 8 8 12 12 10 10 8 8 8 8 8 8 8 8 10 9 8 8 6 6 8 8 10 15 10 11 11 14 11 10 10 8 8 8 10 10 10 9 9 9 9 9 9 11 8 8 8 8 8 8 14 6 6 8 8 10 21 15 8 10 8 9 12 10 8 7 7 9 8 8 10 10 8 8 9 9 9 9 8 8 8 8 13 11 12 11 10 10 8 8 8 8 8 8 8 8 8 8 8 11 8 8 8 8 10 15 16 8 10 6 6 3 0 3 6 6 7 8 8 10 13 16 12 13 9 9 12 13 15 14 13 10 10 10 10 12 12 12 18 15 15 8 8 6 6 8 8 9 9 7 8 8 8 8 10 11 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 10 18 18 9 11 8 8 6 6 8 8 13 18 23 24 20 20 20 20 15 13 9 9 10 11 10 15 9 8 10 6 6 8 8 9 8 15 6 6 6 6 6 12 11 9 9 9 10 8 8 8 6 6 10 8 8 8 8 8 8 8 8 12 11 19 12 16 8 8 9 7 8 13 9 8 7 6 7 8 8 8 6 7 6 6 8 8 10 7 6 8 8 9 9 9 10 9 10 10 10 10 18 8 6 6 7 6 7 6 6 6 6 11 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no165_g18.b1 MSMg01no165_g18.b1 CHROMAT_FILE:
MSMg01no165_g18.b1 PHD_FILE: MSMg01no165_g18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:34 2005
         (644 letters)



>mm_chr11_47026760_47027803
          Length = 1044

 Score = 1011 bits (523), Expect = 0.0
 Identities = 532/535 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   ggaattcatccactcctggcaacatttataaatctggggaaaagcttcaaaattcattgc 64
           ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggaattcatccactcgtggaaacatttataaatctggggaaaagcttcaaaattcattgc 476

                                                                       
Query: 65  tgcccagggctctggtagaaaatttaattaacaataaagatgataatagtgacttttaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 tgcccagggctctggtagaaaatttaattaacaataaagatgataatagtgacttttaat 416

                                                                       
Query: 125 gtttcagtgtattttattttttatctagtagtttttcaaaatatgtcaatacctttaatc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 gtttcagtgtattttattttttatctagtagtttttcaaaatatgtcaatacctttaatc 356

                                                                       
Query: 185 catgccatctattgcttcagctgtattctaaacaatctccctttttgtgtggaattatat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 catgccatctattgcttcagctgtattctaaacaatctccctttttgtgtggaattatat 296

                                                                       
Query: 245 tctagcaaagttagcaaccacatacaagtgaatcaaaactggaatgagagctcactgttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tctagcaaagttagcaaccacatacaagtgaatcaaaactggaatgagagctcactgttg 236

                                                                       
Query: 305 ctagagagattgaaggagagcttctggtctcagagaagtcagtgaagggcttgtgcacag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ctagagagattgaaggagagcttctggtctcagagaagtcagtgaagggcttgtgcacag 176

                                                                       
Query: 365 tatttgagctacgaccttagttaactgaaggggtcagctatgcagagagcaaagaacatt 424
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 tatttgagctaggaccttagttaactgaaggggtcagctatgcagagagcaaagaacatt 116

                                                                       
Query: 425 tgaggcacaggaaacagtagatacaaatgtcttaagggtggacccctttggttatgctcc 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 115 tgaggcacaggaaacagtagatacaaatgtcttaagggtggacccctttggttatgctcc 56

                                                                  
Query: 485 aaggaacagcaaacaactggaatagaaatgtggtctttccttctagcccccaaga 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 55  aaggaacagcaaacaactggaatagaaatgtggtctttccttctagcccccaaga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 644
Length of database: 1044
Length adjustment: 10
Effective length of query: 634
Effective length of database: 1034
Effective search space:   655556
Effective search space used:   655556
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information