Query= MSMg01no165_i07.b1 MSMg01no165_i07.b1 CHROMAT_FILE:
MSMg01no165_i07.b1 PHD_FILE: MSMg01no165_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:42 2005
(689 letters)
>mm_chr11_97151905_97152996
Length = 1092
Score = 965 bits (499), Expect = 0.0
Identities = 676/829 (81%), Gaps = 146/829 (17%)
Strand = Plus / Minus
Query: 5 gaattccctggaatttgtcttactttatagttgtgagctgccacgtgggtctaggaaact 64
||||||||||||||| || ||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1055 gaattccctggaattagtgttactttatagttgtgagctgccacgtgggtctaggaaa-t 997
Query: 65 -agtggggttttctataagaacaggaagtgctcattttaatataagcatatacttttatc 123
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 996 gagtggggttttctataagaacagaaagtgctcattttaatataagcatatacttttatc 937
Query: 124 atctatcaatctatctatcta---ttgtttttttttgtgatagtttccccgtgtagccct 180
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct: 936 atctatcaatctatctatctatcgttttttttttttgtgatagtttccccgtgtagccct 877
Query: 181 agctgtcctggaactcactctgtagaccaggctggcctcaaactcacagagattcacctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 876 agctgtcctggaactcactctgtagaccaggctggcctcaaactcacagagattcacctg 817
Query: 241 cctctgcctcccaagtggtgggattaaaggcatccaacaccacagccctgca-------- 292
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 816 cctctgcctcccaagtggtgggattaaaggcatccaacaccacagccctgcaagcacata 757
Query: 292 ------------------------------------------------------------ 292
Sbjct: 756 catttttttttttaagttctttttttttttccattctccactaggtatttagctcattta 697
Query: 292 ------------------------------------------------------------ 292
Sbjct: 696 catttccaatgccataccaaaagtcccccatatccacccacccccactcccctgcccacc 637
Query: 293 ----------agcacatacatttttaatatgagcatatatatgaaatattggaaatgctt 342
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 636 cactcccccgagcacatacatttttaatatgagcatatatatgaaatattggaaatgctt 577
Query: 343 accttccaacaacaagctaaaatgaacctgtagtcctttaaaacaa---gacatgttggt 399
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 576 accttccaacaacaagctaaaatgaacctgtagtcctttaaaacaaaacaacatgttggt 517
Query: 400 tatttgtctaaaattaggatttatggctggagagatggcacactgattaagaggactggc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 tatttgtctaaaattaggatttatggctggagagatggcacactgattaagaggactggc 457
Query: 460 tgctttttcagagcatacaggttcaattccaagcacccacatggcagctcaaactctctg 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 tgctttttcagagcatacaggttcaattccaagcacccacatggcagctcaaactctctg 397
Query: 520 taactgtacatcctaggggatccaatgacctcttctggcaggtatcaggaactcacatga 579
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 taactgtacatcctagaggatccaatgacctcttctggcaggtatcaggaactcacatga 337
Query: 580 tacactggcatgcattcaggcaaaatacctatacatagtaaatagaatataaaaaatctt 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 tacactggcatgcattcaggcaaaatacctatacatagtaaatagaatataaaaaatctt 277
Query: 640 tatttgtagtatcttttttgttttgttttgttttatttttcaagacagg 688
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 276 tatttgtagtatcttttttgttttgttttgttttattttccaagacagg 228
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1092
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1082
Effective search space: 734678
Effective search space used: 734678
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_i07.g1 MSMg01no165_i07.g1 CHROMAT_FILE:
MSMg01no165_i07.g1 PHD_FILE: MSMg01no165_i07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:42 2005
(219 letters)
>mm_chr11_97001320_97001932
Length = 613
Score = 385 bits (199), Expect = e-111
Identities = 212/219 (96%), Gaps = 6/219 (2%)
Strand = Plus / Plus
Query: 1 tcaggtcccacgtttgtaagacgcatcttctgcttcatctcacaagtctacgaaggcgtg 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcaggtcccatgtttgtaagacgcatcttctgcttcatctcacaagtctacgaaggcgtg 260
Query: 61 atgtcttcctgtcaggccaggaagtccaggtgtgtcccacaccagactggggactcctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atgtcttcctgtcaggccaggaagtccaggtgtgtcccacaccagactggggactcctcc 320
Query: 121 agggaagtctcagtttttagactgaaagcaatccgagggcaggagctgtgtgttccctag 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 agggaagtctcagtttttagactgaaagcaatccgagggcaggagctgtgtgttcc-tag 379
Query: 181 tcagactgggggctttcgggggggggggcaggatcatgc 219
||||||||||||||| |||||||||||||||||||
Sbjct: 380 tcagactgggggctt-----ggggggggcaggatcatgc 413
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 613
Length adjustment: 9
Effective length of query: 210
Effective length of database: 604
Effective search space: 126840
Effective search space used: 126840
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
