Query= MSMg01no165_i11.b1 MSMg01no165_i11.b1 CHROMAT_FILE:
MSMg01no165_i11.b1 PHD_FILE: MSMg01no165_i11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:43 2005
(674 letters)
>mm_chr11_38572315_38573388
Length = 1074
Score = 1257 bits (650), Expect = 0.0
Identities = 668/674 (99%)
Strand = Plus / Plus
Query: 1 aagaaaaaagacttcaaaacacagtaatcgttaaattgatggagttgtatattctgcagc 60
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct: 201 aagaaaaaagacttcaaaacacagtaattgttaaattgatggacttgtatattctgcagc 260
Query: 61 actgcagatatataatttgtaaggaaatgttgtaattagcttcacagggaggtttcttag 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 actgcagatatataatttgtaaggaaatgttgtaattagcttcacagggtggtttcttag 320
Query: 121 aatattctttatgaatgaatgatggtatcactgccaatgccaatttgtaaaaagcaattt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatattctttatgaatgaatgatggtatcactgccaatgccaatttgtaaaaagcaattt 380
Query: 181 aaagatactttaaagcaaagaaaggaagtcgggtggtgcatgctgttcagttggggtggt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaagatactttaaagcaaagaaaggaagtcgggtggtgcatgctgttcagttggggtggt 440
Query: 241 ttatgtacaaaacacaactggtgtttgtaataggcaggccacactctccatggaagcatc 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttatgtacaaaacacaacttgtgtttgtaataggcaggccacactctccatggaagcatc 500
Query: 301 actaagtttggtccccttagtctgaactttgtgtcaattattgattactgttacccatga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 actaagtttggtccccttagtctgaactttgtgtcaattattgattactgttacccatga 560
Query: 361 cttagtaaatagatttccttatgcttttgttctacagtatgcactgaagccagttaaatg 420
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 561 cttagtaaatagatttccttatgcttttgttctacagtatgcactgttgccagttaaatg 620
Query: 421 caaacagtacgtgccatttacaataatatataaaaggttaagagatgaattcaagtgatg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 caaacagtacgtgccatttacaataatatataaaaggttaagagatgaattcaagtgatg 680
Query: 481 ctaacccaatagccttttgcaaatgttgttgttttctgggaaaaaatgtgtaataaacaa 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 ctaacccaatagccttttgcaaatgttgttgttttctgggaaaaaatgtgtaataaacaa 740
Query: 541 agcaccaatgttactggtctcctttccactagtggtattgatgttgcaaaattatataca 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 agcaccaatgttactggtctcctttccactagtggtattgatgttgcaaaattatataca 800
Query: 601 ataaaatgcaagaagggatttctgttggatctgaggatttttattttcatgatactaagg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 ataaaatgcaagaagggatttctgttggatctgaggatttttattttcatgatactaagg 860
Query: 661 ataggtgcagccag 674
||||||||||||||
Sbjct: 861 ataggtgcagccag 874
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 674
Length of database: 1074
Length adjustment: 10
Effective length of query: 664
Effective length of database: 1064
Effective search space: 706496
Effective search space used: 706496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no165_i11.g1 MSMg01no165_i11.g1 CHROMAT_FILE:
MSMg01no165_i11.g1 PHD_FILE: MSMg01no165_i11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:43 2005
(667 letters)
>mm_chr11_38748304_38749373
Length = 1070
Score = 1210 bits (626), Expect = 0.0
Identities = 658/670 (98%), Gaps = 3/670 (0%)
Strand = Plus / Minus
Query: 1 catttaaaatccttccacaggcttgaattggactggcttacaacatcttcctaaaggaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 870 catttaaaatccttccacaggcttgaattggactggcttacaacatcttcctaaaggaac 811
Query: 61 tgtattaaaattcagtcaaaatattcattgatgtgacatgtcagatacttggtgtacatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 810 tgtattaaaattcagtcaaaatattcattgatgtgacatgtcagatacttggtgtacatc 751
Query: 121 tgcagccttaagaataagctcaagacccttctatcacctttggtttgattgtgtgctaaa 180
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 750 tgcagccttaagaataagctcgggacccttctatcacctttggtttgattgtgtgctaaa 691
Query: 181 aaatgtagccttgcccaagacagtgtcatcttttcctgtctgaaaacaaaatcaatgagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 690 aaatgtagccttgcccaagacagtgtcatcttttcctgtctgaaaacaaaatcaatgagc 631
Query: 241 ttttgttagcttgacagtggccagagtctgtagtgttttgcacaaagcatcttaagggct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 630 ttttgttagcttgacagtggccagagtctgtagtgttttgcacaaagcatcttaagggct 571
Query: 301 gtatacagttagtcattccctgaagtgtgtcatatatgcaaggaaatttatcagctatga 360
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 570 gtatacagttagtcattccctgaactgtgtcatatatgcaaggaaatttatcagctatga 511
Query: 361 tttttaatgactaatggggtgtttatcttaattaccatgtcacctatcatgtcacatacc 420
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 510 tttttaatgactaatggggtgtttattttaattaccatgtcacctatcatgtcacatacc 451
Query: 421 atgaaacaattattgcaataaatataataaatgtggattttttcactcagaataatcagc 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 450 atgaaacaattattgcaataaatataataaatgtggattttttcactcagaataatcatc 391
Query: 481 cacctataacacttatatctcctttgtctacctatcactctg---ttatttcattcattg 537
||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct: 390 cacctataacacttaaatctcctttgtctacctatcactctgttattatttcattcattg 331
Query: 538 ctaaaatgagtaaatgcactttaaacttcagtccactgatattcatcttgatagggctga 597
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 330 ctaaaatgagtaaatgcactttaaacttcagttcactgatattcatcttgatagggctga 271
Query: 598 cttagctttcaaattagagctctatgttctccatgagaattctctgaattctctatccta 657
||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct: 270 cttagctttcaaattagagctctgtgttctccatgagaattctctgaatgctctatccta 211
Query: 658 gtggttttga 667
||||||||||
Sbjct: 210 gtggttttga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 667
Length of database: 1070
Length adjustment: 10
Effective length of query: 657
Effective length of database: 1060
Effective search space: 696420
Effective search space used: 696420
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
