BAC Information

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BAC

Clone NameMSMg01-165K07
Chromosome11 (Build37)
Map Location 45,840,152 - 45,840,627
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30
Downstream geneLOC667037, LOC100039624, Adam19, 9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-165K07.T7 (MSMg01no165_k07.b1)MSMg01-165K07.TJ (MSMg01no165_k07.g1)
ACCAG363731AG363732
length740734
length of high quality
(start - end)
483 (45 - 527)532 (70 - 601)
definitionCHROMAT_FILE: MSMg01no165_k07.b1 PHD_FILE: MSMg01no165_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:52 2005CHROMAT_FILE: MSMg01no165_k07.g1 PHD_FILE: MSMg01no165_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:33:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCATGACTGGGCGGAATTC
TCAGAAACTTGTACAATGGATCAAGGTCAAAGCCAAGACCAGGTTTATGC
CTGCAACAGCAGTAGCTTTCACACTGTTTCAGGTTGGAGAAGCTCAATTA
ACAACTGCAGGCTTACTTCTTGATCTTGGCATGGTAGGCAATGGGTGTAA
ATACAACAGAGACATCGCTGTGGTGTGGTGAGTTTTCTTCTTCTGTGAAA
AACATTGAAGGTTGATGTTATGTACATGAGTGCCTGCCTGCATGTATACC
TGGGTACTGCATGCATGCCTGCTGCCTGTAAGGGTCTGAAGAGGGTGTCA
GATCCCCAGGAACTGGACTTACAGATGGCTGTGAGTCATCATATGAGTGC
TGAGAACCGAGCCCACCCCCTCTGCCAGAGCAGCACATGCTGCTAACTAC
TGAGCCATCATCGGCCCTCAATCAGCACATTTTAAACTCTGTTTCAGACT
CTGTGGTATGCAGTCGAAACCAGATTGAGTATGATTTTGCCAAAACTGAT
TGTATGAAGTTTGGTATCTCTAACACTTAGGACTCTTTTTTCTTTTCTGG
ATTCTTCGAGACAGGACCTCTCTGTGTCGACCCTATTTTACCTTATCTCT
TTTCCCGTATTTTTTTTTAATATATACCCCCCACTCCCATCCCTTGTCCC
TTACTCCCCTTATCCTTCCCATTCTTCTCGTCGCTAGTTT
CAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTCAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAACTCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
CTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCC
TTCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTT
TGCCGGTTCCTCAGAAAATTGATTATAATACTACCAGAGGATCCAGCAAT
ACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGGTAAGAAGGACA
CATGCTCCACTATGCCCATAGCAGCCTTATTTATAATAGCCAGAAGCTGG
AAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTA
CATTTACACAATGGAGTACTACTCAGCTATTAAAAGGAATGAATTTATGA
AATTCATAGGCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA
ACACAATCTCAAAGGAACTCACACAATATGTACTCACTGATAAGTGGATA
TTAGCCCAAAAACTTAGGATACCCAAGATATAAGATACCATTTGCTAATC
GCATGAAACTCATGAAGAACGAATAACAAAGTGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no165_k07.b1 MSMg01no165_k07.b1 CHROMAT_FILE:
MSMg01no165_k07.b1 PHD_FILE: MSMg01no165_k07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:33:52 2005
         (483 letters)



>mm_chr11_45839952_45840829
          Length = 878

 Score =  777 bits (402), Expect = 0.0
 Identities = 461/486 (94%), Gaps = 15/486 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaattctcagaaacttgt-acaatggatcaaggtcaaagccaagaccaggtttatgcctg 59
           |||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 201 gaattctcagaaacttgagaca-tggatcaaggtcaaagccaagaccaggtttatgcctg 259

                                                                       
Query: 60  caacagcagtagctttcacactgtttcaggttggagaagctcaattaacaactgcaggct 119
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 caacagcagtagctttcaaactgtttcaggttggagaagctcaattaacaactgcaggct 319

                                                                       
Query: 120 tacttcttgatcttggcatggtaggcaatgggtgtaaatacaacaga-gacatcgctgtg 178
           ||||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||
Sbjct: 320 tacttcttgatcttggcgtggtaggcaatgggtgtaaatacaac-gaagacattgctgtg 378

                                                                       
Query: 179 gtgtggtgagttttcttcttctgtgaaaaacattgaaggttgatgttatgtacatgagtg 238
           |||     ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 379 gtg-----agttttcttcttctgtgaaaaacatcgaaggttgatgttatgtacatgagtg 433

                                                                       
Query: 239 cctgcctgcatgtatacctgggtactgcatgcatgcctgctgcctgtaagggtctgaaga 298
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 434 cctgcctgcatgtatacctgggtactgcatgcatgcctgctgcctgtaggggtctgaaga 493

                                                                       
Query: 299 gggtgtcagatccccaggaactggacttacagatggctgtgagtcatcatatgagtgctg 358
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gggtgtcagatccccaggaactggacttacagatggctgtgagtcatcatatgagtgctg 553

                                                                       
Query: 359 agaaccgagcccaccc---cctctgccagagcagcacatgctgctaactactgagccatc 415
           ||||||||||||   |   |||||||||||||||||||||||| |||| |||||||||||
Sbjct: 554 agaaccgagccc---cggtcctctgccagagcagcacatgctgttaaccactgagccatc 610

                                                                       
Query: 416 atcggccctcaatcagcacattttaaactctgtttcagactctgtggtatgcagtcgaaa 475
           ||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 611 atcagccctcaatcagcacattttaaactctgtttcagactctgtggtatgcaggcgaaa 670

                 
Query: 476 ccagat 481
           ||||||
Sbjct: 671 ccagat 676


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 483
Length of database: 878
Length adjustment: 10
Effective length of query: 473
Effective length of database: 868
Effective search space:   410564
Effective search space used:   410564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)