BAC Information

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BAC

Clone NameMSMg01-166B24
Chromosome11 (Build37)
Map Location 70,737,469 - 70,737,846
singlet/doubletsinglet
Overlap geneRabep1
Upstream geneYbx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e, Alox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik, Psmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, LOC668461
Downstream geneNup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik, Wscd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166B24.T7 (MSMg01no166_b24.b1)MSMg01-166B24.TJ (MSMg01no166_b24.g1)
ACCAG364046AG364047
length742750
length of high quality
(start - end)		682 (48 - 729)378 (76 - 453)
definitionCHROMAT_FILE: MSMg01no166_b24.b1 PHD_FILE: MSMg01no166_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:32 2005CHROMAT_FILE: MSMg01no166_b24.g1 PHD_FILE: MSMg01no166_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:34:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCTCACCTGATAACCACCGAATGGCTGAGAAGCACCTGAAAAAAT
GCTCAGCATTCTTAAATCATCAGAGAAATGCAAATCAAAACAACCCTGAG
ATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACA
GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAATACTCCTCCATTGTTGG
TGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGTGGTTCCT
CAGAAAATTGGACATAGTACTACTGGAGGATCCCGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTCCCAACCGGTAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAACAAATCTATATTCTTGACCAATCTAGCA
TGAATAGATTCTTTCTATTTAAATTTCCCAAAGAAAACCATTCTACTCTC
AGGAACCTCATGAGCAGGCCTCCCCTGCCTTCTCAGCATTCTTGTCTTTC
CTGCATTTACCAGAATGTCATCATAAGCTCTGCTCTCAGGATAGAGCATT
TCCAGTCCTAAGTATCAAATTCTTCAATATACTATCCAGAAAACAGTTCC
AAAGGCCTAAGGACCACTTGACCGGCTTTTTTTTTTTAAATAGCAACAAC
CCAACTCCTGGTATCAACTCTTTATCTAGGTCTCTTTACTTG

CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCAGATCCTATTTATGAATTGGGAA
GTTCACGTTTTCTCTAAGTAGAGAAGGCAGCTTTATAATTGTTCAGTTCT
GGCAAAGGTCCATGGGGTTGTTTCTCACTCCTTTCCTTGTCTTTATCTTT
TAAAGTTCCTTCCCCTCTGAAGGTGATATGCAAGTTGATTCCATTAAAAG
CAGTGTATATTAGGTGACATTGGAGAATTGGTGGAATTCAGGTTGAAGTC
CTTTGAACATTTAATTTTCTCAAAATTACCACAAATGGTTCTTATGCTGC
TAAAGAGAAACTCAGTGTCTTAGGTCCTGCAGAGTGCCTGTGAGAGCGTT
GGTCATCTTAACATTTTCCCCTTTGTGTTTGGAGACGATTCACACTTGCA
GAGAAGTTTGCTGAAAGAGCTTGCAGTGTAGGCCTGACATCTGACTCAGT
GTAAGGAGAGAGCCAACTCGCAGTGTTGTCCTCTGACCTGCATACACATG
CTGTGACACATGTGTACACTCAGACCATCAGACAGATAACAGTGTTGTTT
ACGACTGTCAGTGTAGTTCAGCAGTTGCTAACACTATTCTCTTGTGATCC
TCCTGTATATAGATTATATTATGTGCATATTCTATATTACGCCTTGTGAT
GAACTTATTGTAATTAATGTGTCAAATCTTATGACTCCCCTATATATTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_b24.g1 MSMg01no166_b24.g1 CHROMAT_FILE:
MSMg01no166_b24.g1 PHD_FILE: MSMg01no166_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:34:32 2005
         (378 letters)



>mm_chr11_70737269_70738046
          Length = 778

 Score =  731 bits (378), Expect = 0.0
 Identities = 378/378 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagatcctatttatgaattgggaagttcacgttttctctaagtagagaaggcagcttta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagatcctatttatgaattgggaagttcacgttttctctaagtagagaaggcagcttta 260

                                                                       
Query: 61  taattgttcagttctggcaaaggtccatggggttgtttctcactcctttccttgtcttta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 taattgttcagttctggcaaaggtccatggggttgtttctcactcctttccttgtcttta 320

                                                                       
Query: 121 tcttttaaagttccttcccctctgaaggtgatatgcaagttgattccattaaaagcagtg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tcttttaaagttccttcccctctgaaggtgatatgcaagttgattccattaaaagcagtg 380

                                                                       
Query: 181 tatattaggtgacattggagaattggtggaattcaggttgaagtcctttgaacatttaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tatattaggtgacattggagaattggtggaattcaggttgaagtcctttgaacatttaat 440

                                                                       
Query: 241 tttctcaaaattaccacaaatggttcttatgctgctaaagagaaactcagtgtcttaggt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tttctcaaaattaccacaaatggttcttatgctgctaaagagaaactcagtgtcttaggt 500

                                                                       
Query: 301 cctgcagagtgcctgtgagagcgttggtcatcttaacattttcccctttgtgtttggaga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 cctgcagagtgcctgtgagagcgttggtcatcttaacattttcccctttgtgtttggaga 560

                             
Query: 361 cgattcacacttgcagag 378
           ||||||||||||||||||
Sbjct: 561 cgattcacacttgcagag 578


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 378
Length of database: 778
Length adjustment: 9
Effective length of query: 369
Effective length of database: 769
Effective search space:   283761
Effective search space used:   283761
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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