BAC Information

Click to search

BAC

Clone NameMSMg01-166I19
Chromosome11 (Build37)
Map Location 38,548,409 - 38,548,770
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC276941
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-166I19.T7 (MSMg01no166_i19.b1)MSMg01-166I19.TJ (MSMg01no166_i19.g1)
ACCAG364345AG364346
length773778
length of high quality
(start - end)
365 (43 - 407)313 (73 - 385)
definitionCHROMAT_FILE: MSMg01no166_i19.b1 PHD_FILE: MSMg01no166_i19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:05 2005CHROMAT_FILE: MSMg01no166_i19.g1 PHD_FILE: MSMg01no166_i19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTGATTGCTCTCTTTCAAAGACTCATTAATGAAGGCAACATTATTGT
AAGTCCAAATGGTGGAATCTTTTTATGCAGGTAGACTCATCTGTAGACCC
TGTTTTCACTCATGTTTATTCATATTTGTACTGCAAACACATCACTGATG
GTTTGAGACTTTGGGCTGATGACACTTTACTTACTAGATTTAAGTTCAGC
GTTGATGCTCATTACCAAAGCTATCAAAAATCTTAAGTGCAAGACAATGA
CAAGTTAATTACCATATATATAAGGAGAGCTAAAGCTTGTTGTACTTAGA
AGTTAACAGTCAACTTTTTAACTGAGTATTTCTTCATACAGTTTTACAAT
GAGTGAGCCCCCACACAGTTAATTTAACAGCTTCAATTATGCATGTACTT
TTGACCTAAAACTTGTATCTCTCATACATATTCTTAATATATTCTAATCC
TAACTCATGACTCAATGATGAACTTTTCTTTTTATCATTTTCTCCTTCCA
CTAATTTCTTTTACCTTCCACCTTATTCTCTTATTTCGATTCTTTTTTTA
TTTTTTTTTCTATTACACTTCTTCTCTCATTTATTTCTTCTCCCCTCATA
ATTCTCTTTTATATATATTATTTCCCCCCACCCTATTTTATCCCCCCCTC
CTATCTTTTTATTTAAGTTGCTTACCAATCTTATTTCTACACACACTCTT
ATTTTTTACCAAACCCTATTTTG
GACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCTGTTGAGATCTGTAATCTGTTTTAAA
ATTGGGTTATCTGTTCTCTTGATACTTAGCTTATTTATTTATATATTTTT
TATATTAGTCCTGTTTTGGATATGTATTTGTTAAATGAAAAAAAAAGTAT
TTTTCCCATTCTCTAGGTTGCTGCTTTGTCCAAATGATGGTGTCCTTTGA
TTTATAGAATCTTTTCAATTTCATGAAGATTCATTTATTAATTGTTGATC
GTAGTGCCTATACTGATTGGTTTTGTTCAGAAAGTCTTGTCTTGTGCCAA
CAAGCTCAGAACTGTTCCCCACTTTCTTTTCTGTCATGTTAAGTGTATCT
GGTTGCACCCCCCCCTTTTTTTGAAACTTTGTAATTGATTTTATTGTAAA
CCGAACACTTTTGTTTACCACTATTGACATTCCTTCAGATATTTTATAAA
CACCCTCCAATCATATTACCACTTTCACATCTCTATTCTACTTTTCTCAA
CAACTAATTCTATAATTTCCTACCCGAACACTTAATACATAACTAATCAA
ATCCCTCTTCTATAAATAACAAATTCTCTCCCCCCCCCTTAATAAACCCG
TTCCTCACCCTTTTCTCTATTTCTAATGTATTATTTTTTTATATATTCTC
ACTCATTAATTTCTTTCTTTCCCTTACTTCTCTTTATCTCATCCTTCCAC
ATTTTCCTACTATTAATATATCTTCACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no166_i19.b1 MSMg01no166_i19.b1 CHROMAT_FILE:
MSMg01no166_i19.b1 PHD_FILE: MSMg01no166_i19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:35:05 2005
         (365 letters)



>mm_chr11_38548206_38548970
          Length = 765

 Score =  685 bits (354), Expect = 0.0
 Identities = 360/362 (99%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcactgattgctctctttcaaagactcattaatgaaggcaacattattgtaagtc 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcactgattgctctctttcaaagactcattaatgaaggcaacattattgtaagtc 263

                                                                       
Query: 64  caaatggtggaatctttttatgcaggtagactcatctgtagaccctgttttcactcatgt 123
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 caaacggtggaatctttttatgcaggtagactcatctgtagaccctgttttcactcatgt 323

                                                                       
Query: 124 ttattcatatttgtactgcaaacacatcactgatggtttgagactttgggctgatgacac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttattcatatttgtactgcaaacacatcactgatggtttgagactttgggctgatgacac 383

                                                                       
Query: 184 tttacttactagatttaagttcagcgttgatgctcattaccaaagctatcaaaaatctta 243
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 384 tttacttactagatttaagttcagtgttgatgctcattaccaaagctatcaaaaatctta 443

                                                                       
Query: 244 agtgcaagacaatgacaagttaattaccatatatataaggagagctaaagcttgttgtac 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtgcaagacaatgacaagttaattaccatatatataaggagagctaaagcttgttgtac 503

                                                                       
Query: 304 ttagaagttaacagtcaactttttaactgagtatttcttcatacagttttacaatgagtg 363
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 ttagaagttaacagtcaactttttaactgagtatttcttcatacagttttacaatgagtg 563

             
Query: 364 ag 365
           ||
Sbjct: 564 ag 565


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 765
Length adjustment: 9
Effective length of query: 356
Effective length of database: 756
Effective search space:   269136
Effective search space used:   269136
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)