BAC Information

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BAC

Clone NameMSMg01-167N11
Chromosome11 (Build37)
Map Location 110,522,833 - 110,523,330
singlet/doubletsinglet
Overlap genenone
Upstream genePrkar1a, BC029169, 1700012B07Rik, 1700023C21Rik, LOC100041492, Abca8b, Abca8a, Abca9, Abca6, Abca5, Map2k6
Downstream geneLOC100041523, Kcnj16, Kcnj2, LOC667003, LOC100041539, LOC100041559, EG629966
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-167N11.T7 (MSMg01no167_n11.b1)MSMg01-167N11.TJ (MSMg01no167_n11.g1)
ACCAG365205
length736723
length of high quality
(start - end)
---498 (57 - 554)
definitionCHROMAT_FILE: MSMg01no167_n11.b1 PHD_FILE: MSMg01no167_n11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:43 2005CHROMAT_FILE: MSMg01no167_n11.g1 PHD_FILE: MSMg01no167_n11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXTACTGCCAAGGGTCCTGGCAGAGTTTCTGAAACAAGCAAAATGG
AAAAAACTACCCAGGATAAAAGTCACTCTAAAAACAGCCCAGTTGTCACC
AAATGCTGTGTGGTAGTCAGATAACCACTGGTTAGCAAGGGAGTGTTTAC
TGCGGGATATAGACAGTTGGTTTATAAGGGGAAATTGAACTCAGAGCATC
CTGGTAGACTTGTCAGCTGCAGTCAATAGGATGGAAGAGAAGAGAGAGAG
AGAGGGAAAGAGTGTTTTCAAAATAGATTACCATGTGCATTTAGAAGTAT
ATAAAAAATCTACATTTAAAGGTAGGTATTTAATACCTTTTTCCCCAACC
TTCTATTTCAGACTCAGTATTAAACTATCTTAAGTGCAAGATGGAGAGGT
GGCTCACTCAGTAGTGAAGAGTGTTTGCTGTTTTTCCAGAGGACCCAAGT
TCAATTCCCAGTACACTTGTTGGCTGACTCACAAGCAGACGTAACTCCAA
TTCCAGGAGATCTGCCATTTACAGGCACAAGCACACCACAGACATGGGGG
AAAACATGTATGTGTGTATGCACACCCCCATACATATAGGGAAAATTCAC
TCGCATAGACACTCGCATTTTAAGAAACATATAATTTATCTTTATGACCA
TGGACATAATAAAGTAATTTGTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no167_n11.g1 MSMg01no167_n11.g1 CHROMAT_FILE:
MSMg01no167_n11.g1 PHD_FILE: MSMg01no167_n11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:43 2005
         (498 letters)



>mm_chr11_110522746_110523643
          Length = 898

 Score =  901 bits (466), Expect = 0.0
 Identities = 490/498 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tactgccaagggtcctggcagagtttctgaaacaagcaaaatggaaaaaactacccagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 tactgccaagggtcctggcagagtttctgaaacaagcaaaatggaaaaaactacccagga 526

                                                                       
Query: 61  taaaagtcactctaaaaacagcccagttgtcaccaaatgctgtgtggtagtcagataacc 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 525 taaaagtcactctaaaaacagcccagttgtcaccaaatgctatgtggtagtcagataacc 466

                                                                       
Query: 121 actggttagcaagggagtgtttactgcgggatatagacagttggtttataaggggaaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 465 actggttagcaagggagtgtttactgcgggatatagacagttggtttataaggggaagtt 406

                                                                       
Query: 181 gaactcagagcatcctggtagacttgtcagctgcagtcaataggatggaagagaagagag 240
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 gaactcagatcatcctggtagacttgtcagctgcagtcaataggatggaagagaagagag 346

                                                                       
Query: 241 agagagagggaaagagtgttttcaaaatagattaccatgtgcatttagaagtatataaaa 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 345 agagagagggaaagagtgttttcaaaatagattaccatgtgcatttagaagtatatcaaa 286

                                                                       
Query: 301 aatctacatttaaaggtaggtatttaatacctttttccccaaccttctatttcagactca 360
           ||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||
Sbjct: 285 aatctacatttaaaggtaggtatttaatacctttttccccaagtttctatttcagactca 226

                                                                       
Query: 361 gtattaaactatcttaagtgcaagatggagaggtggctcactcagtagtgaagagtgttt 420
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 gtattaagctatcttaagtgcaagatggagaggtggctcactcagtagtgaagagtgttt 166

                                                                       
Query: 421 gctgtttttccagaggacccaagttcaattcccagtacacttgttggctgactcacaagc 480
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 165 gctgtttttccagaggacccaagttcaattcccagtacacttgctggctgactcacaagc 106

                             
Query: 481 agacgtaactccaattcc 498
           ||||||||||||||||||
Sbjct: 105 agacgtaactccaattcc 88


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 498
Length of database: 898
Length adjustment: 10
Effective length of query: 488
Effective length of database: 888
Effective search space:   433344
Effective search space used:   433344
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)