CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAAGAAGATCCGCGG
AATTCACTTTGTATACCAGGCTGGCCTCGAACTCAGAGATCCACCTGCCT
CTACCTCCTGAGTGCTGGGATTAAAGGTGTGTGCCATCACACCCGGCACT
TGTTACTCTTGCAAAAGACCTGGGTTCAATTCCCAACATTCATATAATGG
CTCATAACCTCCATGACCTCAGTTTCTGGGCACCCAGCAGACACACATGG
TGCACATACACTTATATGAACAAAATATTCATGCACAGAAAGTAAATAGA
TTTTAAAAATCTATTTTATGTATGGCTATTTTTGTCTCCATGTATGTCTA
TGTACCACATGCATTCCTGGTGCCTGAGAAAGCCAGAAAAGGACATTGGA
TTTCCTAGGATTGGAGTAATAGTTGGTTATAAATTTCCATGTGGGTGCAG
GGAACCAAAATAGGGCCCCTCTGCAAGAGCAGCAAGTGTTCTCAGTGGTT
CATCTCTGCAACCTCAGTGCTGGTTGCATTCATATTTAAACTTTGTTTTG
TTGTAATAAAATGTACATAATGTAAACTTTACCATTTTAACCATTTTAAG
TGTGCAATTCAATACCATCAGATATAGTCACAGTTTACAGTGTTGTGTAA
CTATCACAGTTTCAGAACTTTTAATTTAANAATCTCGAACAGAAACTGTG
TATTCAGTCCTTGTAGGTGTCTGACCTCTCTCTATGAAGATGCCTAGTCA
N

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACTATGTAGAACAGACTGGTATCGA
ACTCACAGACATCTGCCTGCCTGTGCCAGCATTAAAGGGACGCACCATCC
CAAAATGCAGAGGCAAACTACTTGGTTAGTGTAAGGATTAAATGAGGAAA
TTCACGTGACGTCCCAGAAGAACGACACTCATCATCGCCCCGGGACAGTT
TGCTGCTGGTGCAGCCACACGGTCCTTACCTGTGAGACTTCCATTGTGCT
GATCCTTACTCATTGCTACGCGTCTCTGGTCACAATTTTTTCCATTCTCT
GCCATTTCATAGATCAGGAACTCTGGAGGAGCTAATACAGAAAATAAAGC
CCAGCAACACATTACATTCTTCTGCTTTGCACCGAGACTAAAACTGAATA
CAGGAGCAACATGGCATATATCCCAATTGTACGATTTTTAACACTATTAT
GTTAAAATTCTCTTTTATAGCAAAGAGTTTTATAAACAATTTATATAATC
CCACACAAAACTTGTAGTAAGGATAAACAAACAAACAAATAAGCAAGCAA
GCTTATGGTTATAAACCTTTTCTTAATAGTTATTCAAAGGCTAGAGAGAT
GGCTCAGTGGTTAAAAGCCTTGGCTGCTCTTCCAGAGAGAGGACCTGGGT
TCAATTCCTAGCACCCACATGGCAGCTCA

Query= MSMg01no167_o18.g1 MSMg01no167_o18.g1 CHROMAT_FILE:
MSMg01no167_o18.g1 PHD_FILE: MSMg01no167_o18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:49 2005
         (613 letters)



>mm_chr11_86478876_86479888
          Length = 1013

 Score = 1083 bits (560), Expect = 0.0
 Identities = 604/626 (96%), Gaps = 14/626 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   actatgtagaacagactggtatcgaactcacagacatctgcctgcctgtgccagcattaa 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 201 actatgtagaacagactggtatcaaactcacagacatctgcctgcctgtgccagcattaa 260

                                                                       
Query: 61  agggacgcaccatcccaaaatgcagaggcaaactacttggttagtgtaaggattaaatga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct: 261 agggacgcaccatcccaaaatgcagaggcaaactacttggttagtgtaaggatt-agtga 319

                                                                       
Query: 121 ggaaattcacgtgacgtcccagaagaacgacactcatcatcgccccgggacagtttgctg 180
           ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 320 ggaaattcacgtgacatcccagaagaaagacactcatcatcgccccgggacagtttgctg 379

                                                                       
Query: 181 ctggtgcagccacacggtccttacctgtgagacttccattgtgctgatccttactcattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ctggtgcagccacacggtccttacctgtgagacttccattgtgctgatccttactcattg 439

                                                                       
Query: 241 ctacgcgtctctggtcacaattttttccattctctgccatttcatagatcaggaactctg 300
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ctatgcgtctctggtcacaattttttccattctctgccatttcatagatcaggaactctg 499

                                                                       
Query: 301 gaggagctaatacagaaaataaagcccagcaacacattacattcttctgctttgcaccga 360
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 500 gaggagctaatacagaaaataaagcccagcaacacattagattcttctgctttgcaccga 559

                                                                       
Query: 361 gactaaaactgaatacaggagcaacatggcatatatcccaattgtacgattt-ttaacac 419
           |||||||||||||||||||||||||||||||||||||||||||||| ||| | |||||||
Sbjct: 560 gactaaaactgaatacaggagcaacatggcatatatcccaattgtatgatatgttaacac 619

                                                                       
Query: 420 tattatgttaaaattctcttttatagcaaagagttttataaacaatttatataatcccac 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tattatgttaaaattctcttttatagcaaagagttttataaacaatttatataatcccac 679

                                                                       
Query: 480 acaaaacttgtagtaaggataaacaaacaaacaaataa------------gcaagcaagc 527
           ||||||||||||||||||||||||||||||||||||||            ||||||||||
Sbjct: 680 acaaaacttgtagtaaggataaacaaacaaacaaataaacacacaaataagcaagcaagc 739

                                                                       
Query: 528 ttatggttataaaccttttcttaatagttattcaaaggctagagagatggctcagtggtt 587
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 ttatggttataaaccttttcttaatagttattcaaaggctagagagatggctcagtggtt 799

                                     
Query: 588 aaaagccttggctgctcttccagaga 613
           ||||||||||||||||||||||||||
Sbjct: 800 aaaagccttggctgctcttccagaga 825


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 613
Length of database: 1013
Length adjustment: 10
Effective length of query: 603
Effective length of database: 1003
Effective search space:   604809
Effective search space used:   604809
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)