BAC Information

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BAC

Clone NameMSMg01-168A05
Chromosome11 (Build37)
Map Location 81,787,117 - 81,787,467
singlet/doubletsinglet
Overlap genenone
Upstream geneAccn1, 1700071K01Rik, 5530401A14Rik
Downstream geneCcl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e, Cct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b, Slfn5, Set8-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168A05.T7 (MSMg01no168_a05.b1)MSMg01-168A05.TJ (MSMg01no168_a05.g1)
ACCAG365327AG365328
length1,0051,155
length of high quality
(start - end)
366 (27 - 392)375 (71 - 445)
definitionCHROMAT_FILE: MSMg01no168_a05.b1 PHD_FILE: MSMg01no168_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:56 2005CHROMAT_FILE: MSMg01no168_a05.g1 PHD_FILE: MSMg01no168_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:56 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCGCTATGGGCCTATAGACTCCTATAGGGAGAGGATCCGCGGAATTCAT
GAAATCAATAGACACCTGATGAATTGGCTCCACTCTGCTGTCGAGGCTAC
AGAAGCGTGGACTCGTCCATTCTTAGGGACCTGGGGCCTGTCCTGGGGAG
GTAAAGGCTCTTCCAACCATGACTCTACCCCTTGCTGCTCCCAGAGACTC
AGCTGCTGTCACTGAACTGGAAAACGCCTGATGTCAGGCCTTGCACACCG
GTTATTTCCAACTTCCTAATCTGTGCACGTGAGTGTAGCTGAGAGCTGGG
GCTACTGAGGAATTGAAACCACCGCCTGTCTGCCCCCTCGGAGAGCAATT
TTGCCTTCCCTGCATGTGTGAATGGACATCCAAGGCTTCCCTGTTTTTTT
CTTTCCACTTTCCTGCCCCTGCCACCCTAACCACAGGATGGTGATTTTTT
TTCCCCCCCCCCCCCAANAGGAGGTGGGTACTCAAAAAAAAAGGAGGTAC
TGTGAAAACAGCTATGTAGCTCACAACTTCAAACTGTGCCTTGCCCTTCA
GGCACTTTTTTAATAAGCAAAAATCCGTTTCAAATGCACCCTTGCCTTGT
AGTATGGAATTAGTACTTTTAACTCTGATTTTGTTTACTTTAACAAGACA
CATCTCCCTGTAACTGGACTCTCGTGGGTGGGCTGACTTCCTCTCCACTA
CTCTCAAAGGAGGCTTTGGGACCCTGTCTGATCACAGCTACTTTTGATCT
CGAAAGCCTTTATTCTATATGTCCCGCTTAAAGGTATCCTCCGCTATATT
ATTTAAGTAAGCTCTATCTTTAGGAATGTCCCCTCTCTTAAGAATTTCCT
GTTTTTGTATCTTTTTTTATGTTCCGTCTTTTCTTTATATATTTATTTTA
CATCTCTTTTTATTTTATTATCCTTTGTATTTTGATTTTTATCTATTTCT
CTTTTCTTTTTCTATTATTCTTTTTACAATATCTTTTTCTTTATTATTAT
CTTTT
NNNTTATGAGTGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTTAGCTAGAGCACTAAGAGACCTGAAGGAA
TTCACAGAGATACACATGGAAAGGAATAAGTCAAAATATCTTTCTTTGCT
GATGATATGATAGTATACATAAGTGTCTTAGTCAGGGTTTCTATTCCTGC
ACAAACATCATGACCAAGAAGCAAGCTGGGGAGGAAAGGGTTTATTCAGT
TTATACTTCTATACTGCTATTCATCACCAAGGAAGTCAGGACTGGAACTC
AAGCAGGTCAGGAAACAGGAGCTGATGCAGAGGCCATGGAGGGAGGTTCA
TTACTGGCTTGCTTCCCCTGGCTTGCTCAGCCTGCTCTCTTATTTTTTTT
AAGACTGCCAGCCCAGAGATGGTCCCACCCACAAGGGGCCTTTCTTTTTT
TTTCGCCCCCCCCCCAAAATGNCTTACCTCTGAAACAAAAGAGAGGGATT
TCCTCAACTGAAGCTCCTTTTTCTGTGATAACTCCAGCTGTGTCAAGTTG
ACACAAAACTAGCCAGTACAATAAGTAATCCTAAATTTCCACCAGGAACT
CCTACAGATGATAAGTATTTTCAGCAAAGTTGCTAGATACAAAATTAACT
CACAAAAACCATCCTGTATACATATAACACATGGACTGAGAAAGAAATAT
GGGAAACACCTTTCATAATATCCTCAAAAATAGAAAATACCTTAGGAGTA
ACTTCTAAACAAAGAAATGAAAGACTTGTATGATAAAACTTACAGCACTT
AGCACTCCCACCCCACCTAGTCCTGGGCACCCCCAACACAACCGAAAATC
TAGACGCAGATTTAAAACTTTTCTCTTGATGATGATAGTAGGATATCCAG
AAAGACTTTTCTAAATCCCTTTAAGAAATTACTGGATAACCCCTGTTTAT
TATAATTTTTGGGCCCTTTTATGAAAAACATGGTTTAACAATTCCTCATC
TGTTTGTAAGTCCTTTTTTTAAATAACTTGTAATACTTTTTCTTTCTTGT
TTTTTTGATAAGAATTATAATTTCCTTTCTTTTATTTTTAAATGGGGAAG
GTGTACCTATTATATTTATAACTTCTTTTTCTAGTTTCCCTTTCTATTAT
AAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_a05.b1 MSMg01no168_a05.b1 CHROMAT_FILE:
MSMg01no168_a05.b1 PHD_FILE: MSMg01no168_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:56 2005
         (366 letters)



>mm_chr11_81786902_81787667
          Length = 766

 Score =  625 bits (323), Expect = 0.0
 Identities = 344/351 (98%)
 Strand = Plus / Plus

                                                                       
Query: 16  ggaattcatgaaatcaatagacacctgatgaattggctccactctgctgtcgaggctaca 75
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| 
Sbjct: 216 ggaattcatgaaatcaatagacacgtgatgaattggctccactctgctgtcgaggctacg 275

                                                                       
Query: 76  gaagcgtggactcgtccattcttagggacctggggcctgtcctggggaggtaaaggctct 135
           |||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 276 gaagtggggactcgtccattcttatggacctggggcctgtcctggggaggtaaaggctct 335

                                                                       
Query: 136 tccaaccatgactctaccccttgctgctcccagagactcagctgctgtcactgaactgga 195
           |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 336 tccaaccatgactctatcccttactgctcccagagactcagctgctgtcactgaactgga 395

                                                                       
Query: 196 aaacgcctgatgtcaggccttgcacaccggttatttccaacttcctaatctgtgcacgtg 255
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 aaacgcctgatgtcaggccttgcacaccggttatttccaacttcctaatctgtgcacgtg 455

                                                                       
Query: 256 agtgtagctgagagctggggctactgaggaattgaaaccaccgcctgtctgccccctcgg 315
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 agtgtagctgagagctggggctactgaggaattgaaaccaccgcctgtctgccccctcgg 515

                                                              
Query: 316 agagcaattttgccttccctgcatgtgtgaatggacatccaaggcttccct 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 agagcaattttgccttccctgcatgtgtgaatggacatccaaggcttccct 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)