BAC Information

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BAC

Clone NameMSMg01-168A13
Chromosome11 (Build37)
Map Location 32,740,040 - 32,740,362
singlet/doubletsinglet
Overlap genenone
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik
Downstream geneLOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-168A13.T7 (MSMg01no168_a13.b1)MSMg01-168A13.TJ (MSMg01no168_a13.g1)
ACCAG365342AG365343
length1,1011,186
length of high quality
(start - end)
39 (48 - 86)322 (70 - 391)
definitionCHROMAT_FILE: MSMg01no168_a13.b1 PHD_FILE: MSMg01no168_a13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:59 2005CHROMAT_FILE: MSMg01no168_a13.g1 PHD_FILE: MSMg01no168_a13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:36:59 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCTATGGGGCTATAGACTACTATAGGGAGAGGATCGGGGAATTCACAGA
TAAAAGTAATATTGGGTGGGGATTTTGGATGGATGCCCTGCTCCATATAA
CCCTTATAATATTTTGTTGACCCGCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGGAAGGGATATTTTTTTTTGTTAC
CGANAGNCACACCAAGGCGAAACTGGGAAAAAAGGTTTTTTTGGTCCTTC
CCCCCNNCCCCCGAGNANNNGGNNTTTAAAAAAGAGAAAGGGGGGGGGNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNGNNNNNNNNNNNNNNNN
NGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNNGNGNNNGG
GNNGGNGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGNGGGGGGG
GNGGGGGGGGGGGGGGGGGGGNGGNGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGNGGGGGGGGGGNNGGGGGGGGGGGGGNGGGGG
GGGGGGGGGGGGGGGGGGGGGNGGGGGNGGGGGGGGGGNGGGGGGGGGGG
GGGGGGNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGNGGGGGGGGGGGGGGGGGGGGNGGGGGGGGGGGGGGGN
GNNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGNNGGGAGGGGGNNGGGG
G
NNNGGTTCATGGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTTTTGGTTTGCCTTCAAGGACACAAAACATT
GCAAAGGTCTTCTCTTGGCAGAGAGGGGCCTGGCATGGAGAGCTGGCTAG
GGGTGTGTATGGAAAGAGTCAGACGTGGGAACCAACAGACCTGGGTTCGA
ATCCTGACTTTGATATCAGCAAGTCAGGTCTGACCTGGGGAAGGAGAAGC
AGGAGGGGGTCATCACATCTAAATCCAGCCTTCCTCATCTGTAAACCGAT
CTATCTGCATAGTCCCTCTGCCATGCTTGGTGCACAATAGTCCTTAACAC
GCATGTTTACTCCCACAGCATACGGTGTTAGCAGAGGAATATTTTTTTTT
CCTCAGACAAGTCGCATACTTTCTTCTGAGGTTGCTGAATCTGTTTTTTT
TTTCCCCCCCCCCCCGATTGTATCCTCTGCCTAAAAAAAAAGAGGATCAT
AGGCCTTACACATAAGGGCTCACCCAGCTCCGGACAGGAGGGATTCTAAA
GATGTAGAAGGTGTTTCTCCTATAGAGGTGCTGGGACCTACCCAGGACTC
ATTAATAACAAACAAACAAAAAAACTGGAAAGTGCCATGGGACTCTATAA
CTAGACTGAAGACACAGGGTTATGGATGGCAGCCAGGGGCTCTTCGGGTT
CAGGCAGGTATTGATCATTACCCTTCAAGAGCCCATCAAGAGAACACTTA
GGTTCCCCTTGATTTATGTCTGACCTCCTAGTACAAGTGTGTCTACACTT
GTGAGCTTGTTTTTATGTGTCACAAAAGCAATTGAGTCCCCTTTTTTGGT
TGTCATAACTGGTAGATTATAATTTACTGTTTCCTTCTTTCTGCCTCTCC
TTGATATAGTTAATAATTTCTGTTTTTTGTTCATCTATTTTTTTTTTATC
CTTTTATTTCTTTTTTTTTCTTCCGTTACTTTTCTCCTTTCTTCTTTTCT
TTATTTTCTTTACTTTGTTTTCTTTCTTTCTTTTTTCTTTTTTTTTTTTT
TTGATCTTTTTTGTTTTCATTTTTTTTCTTTATTTTTTTTTTTCTACTTT
CTATATTTTTCTTCTTTCTTTGTTTCTATATTCCCTTTTGTTTTACACTT
GTTCATATTTCCTCTCTATATTTTACATTCTATTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no168_a13.g1 MSMg01no168_a13.g1 CHROMAT_FILE:
MSMg01no168_a13.g1 PHD_FILE: MSMg01no168_a13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:36:59 2005
         (322 letters)



>mm_chr11_32739669_32740390
          Length = 722

 Score =  601 bits (311), Expect = e-176
 Identities = 320/323 (99%), Gaps = 1/323 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttttggtttgccttcaaggacacaaaacattgcaaaggtcttctc-ttggcagagagggg 59
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 694 ttttggtttgccttcaaggacacaaaacattgcaaaggtcttctctttggcagagagggg 635

                                                                       
Query: 60  cctggcatggagagctggctaggggtgtgtatggaaagagtcagacgtgggaaccaacag 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 634 cctggcatggagagctggctaggggtgtgtatggaaagagtcagacgtgggaaccaacag 575

                                                                       
Query: 120 acctgggttcgaatcctgactttgatatcagcaagtcaggtctgacctggggaaggagaa 179
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 574 acttgggttcgaatcctgactttgatatcagcaagtcaggtctgacctggggaaggagaa 515

                                                                       
Query: 180 gcaggagggggtcatcacatctaaatccagccttcctcatctgtaaaccgatctatctgc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 gcaggagggggtcatcacatctaaatccagccttcctcatctgtaaaccgatctatctgc 455

                                                                       
Query: 240 atagtccctctgccatgcttggtgcacaatagtccttaacacgcatgtttactcccacag 299
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 454 atagtccctctgccatgcttggtgcacagtagtccttaacacgcatgtttactcccacag 395

                                  
Query: 300 catacggtgttagcagaggaata 322
           |||||||||||||||||||||||
Sbjct: 394 catacggtgttagcagaggaata 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)