Query= MSMg01no169_g11.b1 MSMg01no169_g11.b1 CHROMAT_FILE:
MSMg01no169_g11.b1 PHD_FILE: MSMg01no169_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:05 2005
(266 letters)
>mm_chr11_19629805_19630470
Length = 666
Score = 476 bits (246), Expect = e-139
Identities = 258/262 (98%)
Strand = Plus / Minus
Query: 5 gaattcaatgtgtagcatttttctttctgagttttatagagctgttttatcaggtgtctt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 466 gaattcaatgtgtagcatttttctttctgagttttatagagctgttttatcagttgtctt 407
Query: 65 ttggagtagatggatagacaccagggtttcccaaacacctgctcagtgcagtccccatgt 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 ttggagtagatggatagacaccagggtttcccaaacacctgctcagtgcagtccccatgt 347
Query: 125 acttgtggaaaacttccaggaatgcttgcccctcttcttcccggtcatcctctgtgccca 184
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 acttgtggaaagcttccaggaatgcttgcccctcttcttcccggtcatcctctgtgccca 287
Query: 185 atgacaaagccagcacctagctccagagagtttgctgctagcacacccaggttttgtatg 244
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 286 atgacaaagccagcacctagctccagagagtttcctgctagcacacccaggttttgtatg 227
Query: 245 tcatttagcggctgcacacttc 266
|||||||||||||||| |||||
Sbjct: 226 tcatttagcggctgcatacttc 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space: 168849
Effective search space used: 168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no169_g11.g1 MSMg01no169_g11.g1 CHROMAT_FILE:
MSMg01no169_g11.g1 PHD_FILE: MSMg01no169_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:39:05 2005
(287 letters)
>mm_chr11_19465697_19466384
Length = 688
Score = 375 bits (194), Expect = e-108
Identities = 232/256 (90%), Gaps = 19/256 (7%)
Strand = Plus / Plus
Query: 2 atgacatgtcataaatataattacaaaacacacacacacacacacacgactgatacatgt 61
|||||||||||||||||||||||||||||||||||||||||| | | ||||||||
Sbjct: 208 atgacatgtcataaatataattacaaaacacacacacacaca------atttatacatgt 261
Query: 62 gtttaaacaagaaaataaagacaaagctaatcattcttcagatatctatcctggcttcct 121
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 gcttaaacaagaaaatagagacaaagctaatcattcttcagatatctatcctggcttcct 321
Query: 122 gcttctgactctggcttctggcttctgactctggcttctggcttctggctgtgaatactt 181
||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 322 gcttctgactctggcttctggcttctg-------------gcttctggctgtgaatactt 368
Query: 182 tcatttctcctacctgggctgtttgtgaagcattattgctttactcatttcagaagcacc 241
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 tcatctctcctacctgggctgtttgtgaagcattattgctttactcatttcagaagcacc 428
Query: 242 cagttctcacccccct 257
||||||||||||||||
Sbjct: 429 cagttctcacccccct 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 688
Length adjustment: 9
Effective length of query: 278
Effective length of database: 679
Effective search space: 188762
Effective search space used: 188762
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
