BAC Information

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BAC

Clone NameMSMg01-170I05
Chromosome11 (Build37)
Map Location 26,817,433 - 26,817,613
singlet/doubletsinglet
Overlap genenone
Upstream gene5730522E02Rik, LOC100042328, LOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270
Downstream geneLOC100042367, LOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170I05.T7 (MSMg01no170_i05.b1)MSMg01-170I05.TJ (MSMg01no170_i05.g1)
ACCAG367053AG367054
length830714
length of high quality
(start - end)
182 (49 - 230)293 (78 - 370)
definitionCHROMAT_FILE: MSMg01no170_i05.b1 PHD_FILE: MSMg01no170_i05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:29 2005CHROMAT_FILE: MSMg01no170_i05.g1 PHD_FILE: MSMg01no170_i05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCAATGACTATATGGCATTTCCTAGATACACTTTAAGCCTTTGC
TTGGCTGACATATCTTCTGTTCCCTCCACCCCCTGCCTGGTCATTTTGTG
TGCTGATTTTCATTTTTTTTTTTATTGTGTGGTATAGATGGTACCTCTCT
ATGTTACTCAGGTTGGTCTCCAGCTCCTGGGCAAAGCGCCCTCTCTGCTT
CAGCTCTCCTGGTCTACAGAGTTCATCACTATTCTCAGCACATATAGCAA
TTCTCATGATTCCTTACATATCTGTTATTTTTTTTATGAACTCTTCTTCC
TCACAGACCGCATCCTTTTTTTTTTTTTTTCCCCCCCCCCCCCACCCTAT
TATTTTTTTTTTTTTTATTCTTCATCAAGCACCCCCCCCCCTAAAAAAAA
AAAAATAACATTCCCTTTGCGCCTATTTCATCATCCTCTTAAATTTCCTT
CTCCTCCTCACATTTCTTTTTTTTTCTTCTCTCCCCAACCCCCCCTCTTT
CTTCTCTATTATACAACCTCACTCACTTTCCTTTTCTCATTTACACTACC
AATTCATATACTCTCTTTTACTTCCCTCTTTTTTCTCCCATGCCTCTTCT
TACCCCCATTTCCCCCCTTTTCTCCCTCCTCTCCCCACTTTTAACATCCT
TCTCCCCACTTATTCCCCTCTTTTTCCCCTTTTTTCCTCCTTTTTTCTCT
CCTTTTCCTCCCCCCCTTTTTCTCTCTTTTATTCCCCTCCTCCCAACCCT
TCTCTTTCGACTTCTTCCCCCTTACTCTCC
CGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGACAAATGAATGGATCTGGA
GGATATCATCCTGAGTGAGGTAACCCAATCACAAAAGAACACACATGATA
TGCACGCACTGATGAGTGGAATTAGCCCAGAAACTCAGAATACCCAATTT
GCAAAACACATGAAACTCAAGAATAAGGAAGACCAAAGTGTGAATACTTC
GATCCTTCTTAGAAGGGGGAACAGAATACCCATGGAAGGAGTTACAGAGA
CAAAGTGTGGAGTAGAGGCTGAAGGAATGACCATCCAGAAGCTGCCCCAC
CTGGGGATCCATCCCATATTTTACCACCCCCCCCCCACACTATTGCAGAT
GCCAACAAGATTTTTCTGACAGAAGCCTGATATAACTGTCTCCTGAGAGG
CTCTGCCAGTGCCTGGCAAATATAGAAGTGGATGCTCACAGCGATCCATT
GGTCAGAGCACAGTGTTCTCAATGAAGGAGCTAGAGAAAGTACCCAAGGA
GCTGAATGGGCTTGCAACCCCATATTAGGAACACCAATATGAACTAACCA
GTGAGCCCAGAGTTCCCTTGTGACTATACCACCCCCCCCAGATAACACAT
CGTCGCTATTACGCGTCTCCAGCTTGCATATTTACCCAATAATGTCCCAC
CCCGGGCTCCACTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_i05.b1 MSMg01no170_i05.b1 CHROMAT_FILE:
MSMg01no170_i05.b1 PHD_FILE: MSMg01no170_i05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:29 2005
         (182 letters)



>mm_chr11_26817229_26817813
          Length = 585

 Score =  335 bits (173), Expect = 1e-96
 Identities = 178/181 (98%), Gaps = 3/181 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaatgactatatggcatttcctagatacactttaagcctttgcttggctgacata 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaatgactatatggcatttcctagatacactttaagcctttgcttggctgacata 264

                                                                       
Query: 65  tcttctgttccctccaccccctgcctggtcattttgtgtgctgattttcatttttttttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tcttctgttccctccaccccctgcctggtcattttgtgtgctgattttcatttttttttt 324

                                                                       
Query: 125 t---attgtgtggtatagatggtacctctctatgttactcaggttggtctccagctcctg 181
           |   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttttattgtgtggtatagatggtacctctctatgttactcaggttggtctccagctcctg 384

            
Query: 182 g 182
           |
Sbjct: 385 g 385


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 182
Length of database: 585
Length adjustment: 8
Effective length of query: 174
Effective length of database: 577
Effective search space:   100398
Effective search space used:   100398
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)