BAC Information

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BAC

Clone NameMSMg01-170M09
Chromosome11 (Build37)
Map Location 36,884,935 - 36,967,535
singlet/doubletdoublet
Overlap genenone
Upstream geneOdz2
Downstream geneLOC100039148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-170M09.T7 (MSMg01no170_m09.b1)MSMg01-170M09.TJ (MSMg01no170_m09.g1)
ACCAG367235AG367236
length722720
length of high quality
(start - end)
317 (46 - 362)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no170_m09.b1 PHD_FILE: MSMg01no170_m09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:49 2005CHROMAT_FILE: MSMg01no170_m09.g1 PHD_FILE: MSMg01no170_m09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:40:49 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,967,223 - 36,967,535)(36,884,935 - 36,885,221)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCCCAGCGGATTTAGTCTCAGTGCACGGCTCATTCCTAATAGGATT
AGCCATTGAGGTAGCACCTTGCTGTAGAAAAGCTCTTGAGTATCCTTGCA
GTGATTGAAAATTAAGGGATTTGTTTTGATTACTATGTTCAATGCTAAAA
GCAAACCTTTGTTTTGCACATTAGAAATAGTAACAAAAAAAATTATCATG
ACATATGGGCTTCTTATTTTAATTGAAAATAAATTTAGTTCTTAGACTGT
GCCAATCTGTTAATTAATTAGAGGGAGGTAGCAAAAGCCATGGAGGCATT
TCTTTACTGCTTTATATTTTGATCTTCCTGCACATATTTTTTTTTAATGT
AAGCATGTCAGTTTCTTGGTTCAAGCATGAATATATTTACTCTGAATAGA
GAATTTATATTTTGAAGGGTACAGTTCACACTGGTGAGACTAACACAGTA
AATAGTCAGGTCGAGTTTTTGCTTCTTCCTCAGAACCAAACTCACATGGC
TTCCTTCAGTGCCTTATTCTGTGAGAGTGTTAACTCTGAAATTAGTTTTG
AACGGCTCTTTCCTAATTTTTATTGATGCCTTTATTTATTTTTTATTTAT
TGCTTTTATTATATTGCCTTTATTCTGACGGCAATAACTTTACAACCTGT
ACTTGCTTGTATTTAAAATTTC
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCATTACCTCTATGAGGGAGGCTTGTC
TATACCAATTGGGGCATTGGTGAAGCAACCATGGCTTTTGGTATTTGCCA
TGGGGAAGACAAAAACAAATAAACATGCCCCCCCCCCCGAAAAGACGAAC
AATGGAGAAGTTCATGGCCTTATTTGATTCTGATTTCGTAGGTTTTTAGA
CGAGAAACCCAATCAAGGCAAGAATAGCACCAACAGCTTATACATTCCTT
CTCTATCATGATACCACAAGCCTGTGGGTTCTTAATAAACATTGGCTCAC
TGAATGATTCTTTATTGTGTGACCCGCACCCACCTATATCACCAATGTTC
ACTGAGTATTATATTTCACTCCATTTTATAAATGAGGTCCAGTAATCTGA
GAAGCTGCCTTGTGGTCACTAGAATCCATCGTAAAACATAATACTTTCTC
CTTGTCATCATAATGCATTTGTATGCACTGGACAGCTATTGCTTAACTCC
TTGAATAAAAATTATATTCAGCATGTTTATGCCAATTCAACTGCCATCAA
CATCCGAATACCCCCCCCCAAAAAAAAGAAAGATAGAAAAACAACAGAAT
ATTAAGAACAAACAGTCAGCATCAGAGATAATCAGTCCTTTTGGTGAAGA
CACAAAGCAGTTTGGAAAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no170_m09.b1 MSMg01no170_m09.b1 CHROMAT_FILE:
MSMg01no170_m09.b1 PHD_FILE: MSMg01no170_m09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:49 2005
         (317 letters)



>mm_chr11_36967019_36967735
          Length = 717

 Score =  598 bits (309), Expect = e-175
 Identities = 312/313 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccccagcggatttagtctcagtgcacggctcattcctaataggattagccattga 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattccccagcggatttagtctcagtgcacggctcattcctaataggattagccattga 458

                                                                       
Query: 65  ggtagcaccttgctgtagaaaagctcttgagtatccttgcagtgattgaaaattaaggga 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 ggtagcaccttgctgtagaaaagctcttgagtatccttgcagtgattgaaaattaaggga 398

                                                                       
Query: 125 tttgttttgattactatgttcaatgctaaaagcaaacctttgttttgcacattagaaata 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tttgttttgattactatgttcaatgctaaaagcaaacctttgttttgcacattagaaata 338

                                                                       
Query: 185 gtaacaaaaaaaattatcatgacatatgggcttcttattttaattgaaaataaatttagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 gtaacaaaaaaaattatcatgacatatgggcttcttattttaattgaaaataaatttagt 278

                                                                       
Query: 245 tcttagactgtgccaatctgttaattaattagagggaggtagcaaaagccatggaggcat 304
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 277 tcttagactgtgccaatctgttaattaattagagggaggttgcaaaagccatggaggcat 218

                        
Query: 305 ttctttactgctt 317
           |||||||||||||
Sbjct: 217 ttctttactgctt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space:   218064
Effective search space used:   218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no170_m09.g1 MSMg01no170_m09.g1 CHROMAT_FILE:
MSMg01no170_m09.g1 PHD_FILE: MSMg01no170_m09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:40:49 2005
         (289 letters)



>mm_chr11_36884735_36885423
          Length = 689

 Score =  493 bits (255), Expect = e-144
 Identities = 279/287 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcattacctctatgagggaggcttgtctataccaattggggcattggtgaagcaaccatg 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcattacctctacgagggaggcttgtctataccaattggggcattggtgaagcaaccatg 260

                                                                       
Query: 61  gcttttggtatttgccatggggaagacaaaaacaaataaacatgcccccccccccgaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 gcttttggtatttgccatggggaagacaaaaacaaataaacatgccccctcccccgaaaa 320

                                                                       
Query: 121 gacgaacaatggagaagttcatggccttatttgattctgatttcgtaggtttttagacga 180
           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
Sbjct: 321 gacgaacaatggagaagttcatggccttatttgattctgattttgtaggtttttagacaa 380

                                                                       
Query: 181 gaaacccaatcaaggcaagaatagcaccaacagcttatacattccttctctatcatgata 240
           |||||||| ||||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct: 381 gaaacccagtcaaggcaagaatagcaccaacagcttgtacattcgttctctatcatgata 440

                                                          
Query: 241 ccacaagcctgtgggttcttaataaacattggctcactgaatgattc 287
           |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccacaagcttgtgggttcttaataaacattggctcactgaatgattc 487


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)