BAC Information

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BAC

Clone NameMSMg01-171E15
Chromosome11 (Build37)
Map Location 106,873,483 - 107,025,954
singlet/doubletdoublet
Overlap gene1810010H24Rik, Bptf, LOC100042899
Upstream geneKcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2
Downstream geneNol11, LOC671692, Pitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171E15.T7 (MSMg01no171_e15.b1)MSMg01-171E15.TJ (MSMg01no171_e15.g1)
ACCAG367581AG367582
length712798
length of high quality
(start - end)
314 (36 - 349)226 (77 - 302)
definitionCHROMAT_FILE: MSMg01no171_e15.b1 PHD_FILE: MSMg01no171_e15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:28 2005CHROMAT_FILE: MSMg01no171_e15.g1 PHD_FILE: MSMg01no171_e15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,025,649 - 107,025,954)(106,873,483 - 106,873,705)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCATG
GCTGTCTCTGAAGCCAGTGTTCTTAGTGACATTGGTACTTGGGCACAGCT
GAAGGAGAACTCTAGAGTGCAGCCTGACTGAATCAGCAAGCTTTCCAAAG
GATACTGGGCTCTGACGTGAGACTGCCAGGGTTTCACTTGCTAATTAATC
GGTGTCTCCAGATAGCCTAGACTGACCTCAAACTTGAAATCCTCCTGCAA
TAATGTCCAAGGTGCTGGGATTACAGATGTCCACCACCATGCCTGGCTTG
CCTGTCAGCCTTAAGAAGTCTTAGGGCTGGGGACTTGGCTCAGTGTTTTT
CTTGTCCCCGACCCCAACCCGTACATACACCCCAACACCACAAAAATCAA
ATAACCACAAACATGAAGATCTGCTTTTCCTCTGTCCATCTCAAGTCTAT
GCTGACAGTCACAAGGCATCAGTCAGTGGATTTAGAGTGATAATTCTAAA
AATACTGTTAGAAATACAGAAGAGCCAGGCAGTGGTGGCACACGCCTTTA
ATTCCAGCACTTGTGAAGCAGAGGCAGGCACATTTCTGCGTTCGAGGCTC
GTCTGGTCTACTGAGCGACGTCCTATACTTCCCACTACTATTCATATAAT
CCCTGCCCCCCCCTTAATTTCTATCTCCCAAACTACATTTAATAATTCCT
GGTTCTGTCCTT
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTACCTAGGGGTTGGAGGAATAAA
ACTCTGAAACTCTTACTTTTAAAACCTACAATACGGCCTTTTACACGCAG
CAAACACATTTCATGACACCGGAAACCAGTCATCCGAGATCTAGCTATAG
GGCGAAAAACTAAAAAGTATTATTTTGTATTTAGAGACTCTGTCTTCATT
TCCCCTTTTAATCTAGGGGGGAGGGAGAGGGCTGGGGAGACGGATGTTGN
NAAANNNNNNTNNNNNTTTTTTTTTTTTNTTTTTTTTTTTAANNNNTNNN
NNNGGTTTTTGGTGGGTTTCCCAAAGCAAAGCGCCAGATTGANAATTATG
GTAGGTGGAATTGTGTCCCCCCCCAAAAAAAAAAAAAAAAACGGGGGGGG
GGGGGGGGGCTTTCCATCCTTTCTTGCCTTTAACGTGCTGATTACCGTTT
TATGCAGTATGCGACATCCTCTCGTTTGGTGTTCATCATTTTTTACCTCA
CCATATCCGACCGCCCCCTCTCTCACAACGAATTATACCCTTATACCCCA
TCTAACCCCCCCTTTTTCCCTCCCGTGTACTTTCCGCACCTAATGCTTTT
TTCTTCCCACCTGTAAATCTCGGGCCACCATAATACTTCTCTCCTTTTCT
TCTCACGCCGCTGCTGATAACATCACGTGTGGCGCTCCCCCCAATATGTA
TACTCCGTTTTACATGTTTACTGTGATTTTCTTTTCCACCCTCACCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_e15.b1 MSMg01no171_e15.b1 CHROMAT_FILE:
MSMg01no171_e15.b1 PHD_FILE: MSMg01no171_e15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:28 2005
         (314 letters)



>mm_chr11_107025590_107026303
          Length = 714

 Score =  569 bits (294), Expect = e-166
 Identities = 303/306 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcccatggctgtctctgaagccagtgttcttagtgacattggtacttgggcacagc 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gaattcccatggctatctctgaagccagtgttcttagtgacattggtacttgggcacagc 306

                                                                       
Query: 65  tgaaggagaactctagagtgcagcctgactgaatcagcaagctttccaaaggatactggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgaaggagaactctagagtgcagcctgactgaatcagcaagctttccaaaggatactggg 246

                                                                       
Query: 125 ctctgacgtgagactgccagggtttcacttgctaattaatcggtgtctccagatagccta 184
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 ctctgatgtgagactgccagggtttcacttgctaattaatcggtgtctccagatagccta 186

                                                                       
Query: 185 gactgacctcaaacttgaaatcctcctgcaataatgtccaaggtgctgggattacagatg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gactgacctcaaacttgaaatcctcctgcaataatgtccaaggtgctgggattacagatg 126

                                                                       
Query: 245 tccaccaccatgcctggcttgcctgtcagccttaagaagtcttagggctggggacttggc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 125 tccaccaccatgcctggcttgcctgtcagccttaagaagtcttagggctggggacgtggc 66

                 
Query: 305 tcagtg 310
           ||||||
Sbjct: 65  tcagtg 60


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 314
Length of database: 714
Length adjustment: 9
Effective length of query: 305
Effective length of database: 705
Effective search space:   215025
Effective search space used:   215025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no171_e15.g1 MSMg01no171_e15.g1 CHROMAT_FILE:
MSMg01no171_e15.g1 PHD_FILE: MSMg01no171_e15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:28 2005
         (226 letters)



>mm_chr11_106873283_106873908
          Length = 626

 Score =  408 bits (211), Expect = e-118
 Identities = 220/223 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctacctaggggttggaggaataaaactctgaaactcttacttttaaaacctacaatacgg 60
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctaccgagggggtggaggaataaaactctgaaactcttacttttaaaacctacaatacgg 260

                                                                       
Query: 61  ccttttacacgcagcaaacacatttcatgacaccggaaaccagtcatccgagatctagct 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ccttttacacgcagcaaacacatttcatgaaaccggaaaccagtcatccgagatctagct 320

                                                                       
Query: 121 atagggcgaaaaactaaaaagtattattttgtatttagagactctgtcttcatttcccct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atagggcgaaaaactaaaaagtattattttgtatttagagactctgtcttcatttcccct 380

                                                      
Query: 181 tttaatctaggggggagggagagggctggggagacggatgttg 223
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttaatctaggggggagggagagggctggggagacggatgttg 423


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 626
Length adjustment: 9
Effective length of query: 217
Effective length of database: 617
Effective search space:   133889
Effective search space used:   133889
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)