Query= MSMg01no171_g04.b1 MSMg01no171_g04.b1 CHROMAT_FILE:
MSMg01no171_g04.b1 PHD_FILE: MSMg01no171_g04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:35 2005
(318 letters)
>mm_chr11_44857686_44858403
Length = 718
Score = 582 bits (301), Expect = e-171
Identities = 311/315 (98%), Gaps = 3/315 (0%)
Strand = Plus / Minus
Query: 5 gaattcaataaatatcaaaatttgaggcccatcttttttacttaataactttaccccaga 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 gaattcaataaatatcaaaatttgaggcccatcttttttacttaataactttaccccaga 293
Query: 65 gcagatcatttcatctcctaaagacttaattatataactttcttgatggtccaatttttg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gcagatcatttcatctcctaaagacttaattatataactttcttgatggtccaatttttg 233
Query: 125 tgtctgttgcacagaattctaaggattcattttttt--aaataaatatattgagtggttc 182
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 232 tgtctgttgcacagaattctaaggattcatttttttaaaaataaatatattgagtggttc 173
Query: 183 tacaatcatttcttagg-atttttttattacttattgtcttctttatcaagaatggaaaa 241
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tacaatcatttcttaggaatttttttattacttattgtcttctttatcaagaatggaaaa 113
Query: 242 actgacaaaacttaacagcatcatatttagaaatctataaattaatccagaaactattaa 301
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 112 actgacaaaacttaacagcatcatatttagaaatctagaaattaatccagaaactattaa 53
Query: 302 ctgccactagttctt 316
|||||||||||||||
Sbjct: 52 ctgccactagttctt 38
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no171_g04.g1 MSMg01no171_g04.g1 CHROMAT_FILE:
MSMg01no171_g04.g1 PHD_FILE: MSMg01no171_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:36 2005
(297 letters)
>mm_chr11_44784044_44784740
Length = 697
Score = 574 bits (297), Expect = e-168
Identities = 297/297 (100%)
Strand = Plus / Plus
Query: 1 attatgcaaataaggaaatgggtgaatccatacctctcctgttatccgtggcctagattg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attatgcaaataaggaaatgggtgaatccatacctctcctgttatccgtggcctagattg 260
Query: 61 aaaaggtaaaaattgtaggattttgaataatgttttcagggactggagtgatattattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaggtaaaaattgtaggattttgaataatgttttcagggactggagtgatattattaa 320
Query: 121 ctgtgtaaagctcctgtttatcgttaaacattttgctgacaattagaattatgggtgggg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgtgtaaagctcctgtttatcgttaaacattttgctgacaattagaattatgggtgggg 380
Query: 181 tagaatgatctagaacttacccccccatactcactcctgtctctctgatgcatatcttga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tagaatgatctagaacttacccccccatactcactcctgtctctctgatgcatatcttga 440
Query: 241 ttaaataacttttataacaaacaccttctctgcagaaagagctccatgactttttct 297
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttaaataacttttataacaaacaccttctctgcagaaagagctccatgactttttct 497
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space: 198144
Effective search space used: 198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
