BAC Information

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BAC

Clone NameMSMg01-171H20
Chromosome11 (Build37)
Map Location 108,111,957 - 108,112,090
singlet/doubletsinglet
Overlap genePrkca
Upstream genePitpnc1, Psmd12, A830035A12Rik, Helz, Cacng1, Cacng4, Cacng5
Downstream geneApoh, LOC100041381, Ccdc46, Olfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171H20.T7 (MSMg01no171_h20.b1)MSMg01-171H20.TJ (MSMg01no171_h20.g1)
ACCAG367716AG367717
length787719
length of high quality
(start - end)
---134 (448 - 581)
definitionCHROMAT_FILE: MSMg01no171_h20.b1 PHD_FILE: MSMg01no171_h20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:43 2005CHROMAT_FILE: MSMg01no171_h20.g1 PHD_FILE: MSMg01no171_h20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:44 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTCAGAAGGAATAATAGAAGTTGGGTGGCTCTCCTTTTAGTTATATTCTG
CATTTATGCTGCCTTTTATTTAACTCATTAGTCTCGCCTTTAGAAAAATC
CATTTCTTTGTGGACAGCTATGAAATATGAAATGGGATAAGACCTTCTTA
GGGTTCCTGGCTGCCACAGAAGTCAGCAAACCTCAAGCAAGGCAGCAATA
GGAACATCCTTAGAAAGGAGAGACACACTTCATATGCAGAGGATGCCCCT
CGACAAGCGCAATCTATTCTTGAAAGTTGTGGAAAATGCTTTTTGTTCCA
TCAGATTATATTTTGTACCCCAGAGCCGACCAATAACGCAGAAGCCCTGA
AACGACGACATGTCACCAAGGGTTACCCAGAAACATTTGGGGGTTTTGGT
TCGATTGCCTTGCCTGTGGTGATGCCGAATTCCTGCTTTTGACCTTTGTC
TTCTGCGTTCATCTCCACTTTTTGTATTATTTGCTTGATGTTTGATTTGC
CATTTATCCTGTCTTCTTTTTCATTTTGTTTTCCCCCTTTTTCCCTTGTA
TTCCACTTTGCTTTTCCTCCTTTATTATCTGTTCCTTTTTTTTAGCTATA
TTCACCTGTTCTATTTTTATCCTTTCCTGTTACATGCCCTTTGCCGCTCT
CAAATTACCTCCTATATCAATTCTTCATTACCCGTTTGCCGCNATACCTC
TTTTCATTCCTCCTTTTTTCGCACAATTATTTTCAAC
CCCCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXACTTGATCTGAGACATGTGAATG
GAGGGAAAACTCAAGCACTAATCCCCCAAGGAAATTCCTGGCTCTCTACA
GACTGGACAATGTCCCTCCAGGAACTGGGGAAACAAGAGGTCATGTAGAC
TTGAGGGTCAGCTGCTAGAGTCACACCCCAACATCTCCTTTTGCAGCAAC
ATGGCTTATTCACTTCTCAGCATCAGCTTCCACATCATCAAGTGAAGAGA
ACAGCAGTGTCCACTCAAGACTGCTGAACAGACTGAGCGAATTAATTTTC
AAAAAATTTTTGGTCNNGCCCATGACAAANCCTTTTTCACTGTGGTTTTA
ATTCTGGTCAGTTCTTGAAATAAAAAAAAGAAACCAGGCAGACGGCACCA
TAAGGCTCTGTGGACAACACTCCACAAGTCAATCTATAGCTAAACATCGC
TCTTTCCCACTCCAACAGGTACTTGGACCTCGCTCAACTTCCTGTCACTC
AAACCATCCATCCTTCCCTGCTCTTTTCCAGCCACTGTGAACATGTATGC
TGTTGTTCTTAGACTCAGCTTTCCACAGAGCTCATATGTCCATTTTTTTC
TTGGCGAAATCTTCCATCTGGCCAGCCATTCTCCACCGGTCTAGACCATG
TGCTCCAGTTGCGATCTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_h20.g1 MSMg01no171_h20.g1 CHROMAT_FILE:
MSMg01no171_h20.g1 PHD_FILE: MSMg01no171_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:44 2005
         (134 letters)



>mm_chr11_108111757_108112290
          Length = 534

 Score =  252 bits (130), Expect = 9e-72
 Identities = 133/134 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccataaggctctgtggacaacactccacaagtcaatctatagctaaacatcgctctttcc 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 ccataaggctctgtggacaacactccacaagtcaatctatagctaaacgtcgctctttcc 260

                                                                       
Query: 61  cactccaacaggtacttggacctcgctcaacttcctgtcactcaaaccatccatccttcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cactccaacaggtacttggacctcgctcaacttcctgtcactcaaaccatccatccttcc 320

                         
Query: 121 ctgctcttttccag 134
           ||||||||||||||
Sbjct: 321 ctgctcttttccag 334


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 534
Length adjustment: 8
Effective length of query: 126
Effective length of database: 526
Effective search space:    66276
Effective search space used:    66276
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)