BAC Information

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BAC

Clone NameMSMg01-171J20
Chromosome11 (Build37)
Map Location 98,913,192 - 98,913,469
singlet/doubletsinglet
Overlap geneIgfbp4
Upstream geneStac2, Fbxl20, LOC665606, Pparbp, LOC666613, LOC100039982, Crkrs, Neurod2, Ppp1r1b, Stard3, Tcap, Pnmt, Perld1, Erbb2, 1810046J19Rik, Grb7, Ikzf3, Zpbp2, Ormdl3, Gm12, LOC100040117, Gsdm3, Gsdm2, Gsdm1, Psmd3, Csf3, Thrap4, Thra, Nr1d1, 4121402D02Rik, Casc3, Rapgefl1, Wipf2, Cdc6, Rara, Gjc1, Top2a
Downstream geneTns4, Ccr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171J20.T7 (MSMg01no171_j20.b1)MSMg01-171J20.TJ (MSMg01no171_j20.g1)
ACCAG367798AG367799
length749718
length of high quality
(start - end)
321 (41 - 361)278 (80 - 357)
definitionCHROMAT_FILE: MSMg01no171_j20.b1 PHD_FILE: MSMg01no171_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:53 2005CHROMAT_FILE: MSMg01no171_j20.g1 PHD_FILE: MSMg01no171_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:53 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TCGGCCAGCCTGGGCTACAGATCAAGACCCTGTCTCAGAAAAATTCCAAC
AAAATTGCTGGGAAATATTGCTCAACCATCGGAATGCTTACATAGCATGC
ATGAGTGCAGCATAAACTTAGCGTGGTGGTTCAAGGCCTGCAATCCCAGC
ACTTGGGAAGTGAAGGCCGGGGATCAGAAGTTCAAGGTCACTCTAGGCTA
CAGGGAGAGTTCAAGACCGGACTGGGCTATATGAGATTCTCGTCCTAATC
AACTCAAGCAAACAAGCAAACAGACACACACAAACTCACAGTCACCCACA
CGTGGATAATTATATTATCCTGCACCCGCCACCAACAGGAAACCCAAGAA
AAGTCCCTTTACCCACTAGGCCACCTTGAAGGCCCCGGAAACCGGATTCC
ATTAGAATTCTTACACGGGGAAGGCATAGATCACCAGGAAGTCTGCCAGG
CATCCCTGTTGATTTGCAGAGATAAAAACTGAGCCACTGAGGGATGAAAT
GACCAACGAGCACCAGAGGTAGTGCCTGTGGCTTTTCAGATACACCACCT
CTAGGATACAGTGACCAGATACAACACGGCCTGAGTTCACCTCCACCACC
CCCACCCCCAATAACCACCACCCCCACCCCCAACCATCACCCCTTCACCC
GTAAAGCTGCTTCCCATTTGAGGGAAGGAAGAGGATTAGCATCTATTCG
NCACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTCATTCATTCATCCA
CCTGAAAACACGTATTGAAAACATACTATGTGCCAGCTTTAGTTTTCAGC
CCTGGGAAGCCTCGTTGTGATTTCCTCCGATTGTAGAATGTGACGAGGTG
TTCTCAACTCAAGGCCCACGGGAGAAGAGAAACCTCATTCTTGGAGTGAG
AGAGAAAGAAAGTGGTGAACATTGAACGCCCTCCCTCTCCATCTTGGCCA
GAGCGTGGGAAGGTGTAGAGTATAGGCTCACGGCTCCTGAGACCCACCTC
TGCTCTGTTCNGTTGTTTACACCTCCCTCCTTGGGGCCTCCAGGGCACAA
GCTTGAGGGACAGGGCCCATCTTAGAAAAAGAAATTCGGTCATCCGACAA
TGCCTTGCAGGTAGATCTCTGCTGTGGGAAAGGAATGGGGTGAGGAAGGC
CGGAAGGACAGGGGGCAGGGAGGTGGGCTCATCACTCTGAGCCTGCAGGA
TAGAGGAAAGAATGTGAGATTGGATTGTGTGTGTCTGACGAATGTCCTCA
TTCTGGTCCCAATTTGCTGCCTCTGCCCATGATATCCTATTTATGATTCT
CCCTTTCCATTTGTCCTCACCTTGTGCCTTTGTCCCTCTTTCCCCAATTT
TCCTATTTTTATTTTTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_j20.g1 MSMg01no171_j20.g1 CHROMAT_FILE:
MSMg01no171_j20.g1 PHD_FILE: MSMg01no171_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:53 2005
         (278 letters)



>mm_chr11_98912992_98913669
          Length = 678

 Score =  509 bits (263), Expect = e-148
 Identities = 275/279 (98%), Gaps = 2/279 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattcattcattcatccacctgaaaacacgtattgaaaacatactatgtgccagctt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attcattcattcattcatccacctgaaaacacgtattgaaaacatactatgtgccagctt 260

                                                                       
Query: 61  tagttttcagc-cctgggaagcctcgttgtgatttcctccgattgtagaatgtgacgagg 119
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagttttcagcgcc-gggaagcctcgttgtgatttcctccgattgtagaatgtgacgagg 319

                                                                       
Query: 120 tgttctcaactcaaggcccacgggagaagagaaacctcattcttggagtgagagagaaag 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tgttctcaactcaaggcccacgggagaagagaaacctcattcttggagtgagagagaaag 379

                                                                       
Query: 180 aaagtggtgaacattgaacgccctccctctccatcttggccagagcgtgggaaggtgtag 239
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 380 aaagtggtgaacattgaacgccctccctctccatcttggccagagcgtaggaaggtgtag 439

                                                  
Query: 240 agtataggctcacggctcctgagacccacctctgctctg 278
           |||| ||||||||||||||||||||||||||||||||||
Sbjct: 440 agtagaggctcacggctcctgagacccacctctgctctg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)