BAC Information

Click to search

BAC

Clone NameMSMg01-171K07
Chromosome11 (Build37)
Map Location 61,357,096 - 61,357,373
singlet/doubletsinglet
Overlap geneEpn2
Upstream geneAlkbh5, LOC100042448, LOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171K07.T7 (MSMg01no171_k07.b1)MSMg01-171K07.TJ (MSMg01no171_k07.g1)
ACCAG367818AG367819
length660732
length of high quality
(start - end)
---278 (77 - 354)
definitionCHROMAT_FILE: MSMg01no171_k07.b1 PHD_FILE: MSMg01no171_k07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:55 2005CHROMAT_FILE: MSMg01no171_k07.g1 PHD_FILE: MSMg01no171_k07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:41:55 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NGAAGATTTGCCAAAAAAAAGGGNNANANNGNAANNNNNNNAANANNNNN
NNAGGGAGAGANGGTTTTGCCGAGAAAAAAGGGNNNNGGNNNGGANANNN
NNANAAGNNAGGGGNAGAGAGANNNANAANCANAGAGNCAAGNNNNANTG
GNNNNNANGNNNNAAGGNNNAGAAAGNNNAAGAATGAGGAGANNAAGAAG
TTTTTATTGAAAAGGGNNNTCAGAAANTCTGGGANNAGGGNCTGNAAGNA
GAAAANNTGGGAGAGGATTATGGTTGGAANANCAAAAGAGNGANGAGAGA
AAAATGTTTTTTTTTCCCCCCCCCCCCCCCACANGAAAGGAGNGGGGANN
NNANGGGAGNNNNNNGAGAAGNNNNGAAAANNAGAAGGGGGGGGGGGAGG
GANNNNNNNGAANNGGAGANAAGGGGNNAAAAGGGAAGAGAAGGGGGACA
GCAAGAGACAAGAAGAGGAGCAAAGAAAAGGCAGGAAGGGGAGAGCCGAA
GGGCCCACCACCCGGACGACCCAGGACGCAGGCCCGGCAAAGACCACACG
GGCAGCACAGNCAGACAACACACCCCCCCCAGGAAAGGCCGCGGCACCCC
GATTTTTTTTTTTTGCTGACCAACGCCCGCCGCCTAAAATCCTGGACGCC
GGGCCCCCAT
CGAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGCCTCTTCAAACACAGTGACCTA
GAATTGACAGTACAGCTAACTCTCTGTTCATTGTGACAATGGGGATTTCA
GCAATGATAACAGGCCATTGGAAAGCAAAAATAATCCCACTGGAAGTCCA
ACAGTTTTCTACTCCTACACTGGGAACAGTGGCTTCCAGTGGCTATCACT
GAGGGTCTGCTACTAGCTTTCAGAAATTGAAAGCATACATTTCCATCTCA
AAAAGGCCAATCGCTTGTTTCCACTACCACTCTGTGGCCTGGCAGGCAAC
AAAGTATCCTTATTTCACAGAACAAGCCATACAGGGAAGATAGAATCATC
ACCCATGCCTACCCACTAAGAAAATACACTCTAAGCAGGTGGTTATATGA
GTGTGGNCAGGGGAGCACAGGGCTGTAAGCTCCCAGGAAAGAGAGGCAGA
AAGGATTCCAAGCACTGGAAGCTAGCTAGACAGGAGGTCCAGCAGGAGGC
AGGTAGAGAGTTGGCTGCACTGACATGACAAGTCCCACCCTAAGCAAGCT
GCATGGCATTTCTATGAAGAAAAGTAAACCGCTGTCCCACCTCGGTTTGT
GTGGTCACAAGCGACGTAGTTCTTGGGCCCCCTCCCCCTTTATAGCGGCC
GGTTTTACTTACCTTTTATTTTCCCCCCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_k07.g1 MSMg01no171_k07.g1 CHROMAT_FILE:
MSMg01no171_k07.g1 PHD_FILE: MSMg01no171_k07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:41:55 2005
         (278 letters)



>mm_chr11_61356896_61357573
          Length = 678

 Score =  522 bits (270), Expect = e-153
 Identities = 276/278 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcctcttcaaacacagtgacctagaattgacagtacagctaactctctgttcattgtga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcctcttcaaacacagtgacctagaattgacagtacagctaactctctgttcattgtga 260

                                                                       
Query: 61  caatggggatttcagcaatgataacaggccattggaaagcaaaaataatcccactggaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatggggatttcagcaatgataacaggccattggaaagcaaaaataatcccactggaag 320

                                                                       
Query: 121 tccaacagttttctactcctacactgggaacagtggcttccagtggctatcactgagggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccaacagttttctactcctacactgggaacagtggcttccagtggctatcactgagggt 380

                                                                       
Query: 181 ctgctactagctttcagaaattgaaagcatacatttccatctcaaaaaggccaatcgctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgctactagctttcagaaattgaaagcatacatttccatctcaaaaaggccaatcgctt 440

                                                 
Query: 241 gtttccactaccactctgtggcctggcaggcaacaaag 278
           |  |||||||||||||||||||||||||||||||||||
Sbjct: 441 gggtccactaccactctgtggcctggcaggcaacaaag 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 678
Length adjustment: 9
Effective length of query: 269
Effective length of database: 669
Effective search space:   179961
Effective search space used:   179961
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)