BAC Information

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BAC

Clone NameMSMg01-171M05
Chromosome11 (Build37)
Map Location 105,721,050 - 105,846,086
singlet/doubletdoublet
Overlap geneTanc2, Cyb561, Ace
Upstream geneLOC632784, LOC276809, LOC100041125, 4921510J17Rik, Mettl2, LOC666771, Tlk2, 1700052K11Rik, Mrc2, Rnf190, EG666807, LOC667737
Downstream geneEG217246, Kcnh6, Wdr68, Ccdc44, Map3k3, Limd2, 2610019A05Rik, 2610204L23Rik, Ddx42, Ftsj3, Psmc5, Smarcd2, Tcam1, Gh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-171M05.T7 (MSMg01no171_m05.b1)MSMg01-171M05.TJ (MSMg01no171_m05.g1)
ACCAG367896AG367897
length721713
length of high quality
(start - end)		315 (46 - 360)298 (76 - 373)
definitionCHROMAT_FILE: MSMg01no171_m05.b1 PHD_FILE: MSMg01no171_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:03 2005CHROMAT_FILE: MSMg01no171_m05.g1 PHD_FILE: MSMg01no171_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(105,845,776 - 105,846,086)(105,721,050 - 105,721,361)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGTACACTGTAGAGTGTGTGTCCAGTGTTTTCCCACGTGCTTTAG
CTTCCAGGGAAACACACAGGCTGTGGCAATCTGCATCTCATTTAATCCCA
AACCACAGAGTGGATTCACGTGAATGCTAATGGCCAGGGGTGAATGACAG
TTACAGAGCAGTCTGAGTCAGAAGGCTCTGCCTCTCTGAGTTGATCCCTC
TCTCTTCTACAAGCCACTTCCAATGATGGCTACTTCTGCCTGGGATCTAA
GCAGACTCTCCCAGGGTAGGCTCACCTCATAATTCTTTCTTATGGGGAGT
CTGCTACAATGTTTCTGATTGCCCACACCCCCAAGATTCCCAGACAAAGT
TTGGAGCTGAGACAAAAGGATGGACCATCTAGAGACTGCCATATCCAGGG
ATCCATCCCATAATTAGCCTCCAAACGATGACACCATTGCATACACTAGC
AAGCGTTTGTTGCAAGGACGGTTGATATAGCTGTCTCTTGTGAGACTAGG
CTGGGGCCTAGCAAACACATAAGTGGATGCTCACAGTCAACTATTGGATG
GATCACAGGGCCACCAATGGAAGAGCTAGAGAAAGTATCCAAGGAGCTAA
TGAGATCTTGCAACCCTGTACGTGCATCATTATGTACTAGCCAGTACCCC
AGAGCTCTTGACTCTAGCTGC

NCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTCTTAGTAATAAAAAGAAACAAAT
ACTACATTCAACAGTGTTAGTCTCAGAAGAAACAAATGTGTGTAGCCTGT
GGTGATCGAATTTAAACACTGGCTGGCTGCCCTTTGATCACTGACAGGAA
GGATACCTAAGGGAATTTTCTTGAATGACAGAAATGTTTTTCAATTTGAC
CAGGTTTTTAGTTGCATGATTATATATATATTTACCAAAACTTATCAGAG
TATATAATTGAAATAGCCTTTTTTTAAAATCATATATACATATCCTCAGG
TAGCTAGAGTTTTCCTCCCACCCCACCCTTTACGGAAAATACTTTTCAAT
TCGTAGTCAGGAATTAGATTGTTAATAACGCACTTCTCCTTTAAAAAAAT
ATAGACAGTATTTTCCAAAATTTTTAAAGATTCCAAAAGCTTCCCAGTGG
GCATTTGCTTCAGCCACCAATATGAAGTGAGAGAACAGGAGCACCAGAGC
AGAAGGGAGGTGATTCTGAGGGACAGACAGTGGCTGTGGGTCTGTTAGCG
ACTCCTGTGTGCTGTGCTCAGAAGCACACTAAGATGCAGTTGGGATTTCA
GCACTCGCTGTTTCCTCTTCTCATTCAGTGTCTGTAATCACTACTTATCC
CCGGCACCTATGT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no171_m05.b1 MSMg01no171_m05.b1 CHROMAT_FILE:
MSMg01no171_m05.b1 PHD_FILE: MSMg01no171_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:03 2005
         (315 letters)



>mm_chr11_105845572_105846286
          Length = 715

 Score =  594 bits (307), Expect = e-174
 Identities = 310/311 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtacactgtagagtgtgtgtccagtgttttcccacgtgctttagcttccaggg 64
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 515 gaattctgtacactgtagagtgtgtgaccagtgttttcccacgtgctttagcttccaggg 456

                                                                       
Query: 65  aaacacacaggctgtggcaatctgcatctcatttaatcccaaaccacagagtggattcac 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 aaacacacaggctgtggcaatctgcatctcatttaatcccaaaccacagagtggattcac 396

                                                                       
Query: 125 gtgaatgctaatggccaggggtgaatgacagttacagagcagtctgagtcagaaggctct 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 gtgaatgctaatggccaggggtgaatgacagttacagagcagtctgagtcagaaggctct 336

                                                                       
Query: 185 gcctctctgagttgatccctctctcttctacaagccacttccaatgatggctacttctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 gcctctctgagttgatccctctctcttctacaagccacttccaatgatggctacttctgc 276

                                                                       
Query: 245 ctgggatctaagcagactctcccagggtaggctcacctcataattctttcttatggggag 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 ctgggatctaagcagactctcccagggtaggctcacctcataattctttcttatggggag 216

                      
Query: 305 tctgctacaat 315
           |||||||||||
Sbjct: 215 tctgctacaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no171_m05.g1 MSMg01no171_m05.g1 CHROMAT_FILE:
MSMg01no171_m05.g1 PHD_FILE: MSMg01no171_m05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:03 2005
         (298 letters)



>mm_chr11_105720850_105721547
          Length = 698

 Score =  472 bits (244), Expect = e-137
 Identities = 289/312 (92%), Gaps = 17/312 (5%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttcttagtaataaaaagaaacaaatactacattcaacagtgttagtctcagaagaaacaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 ttcttagtaataaaaagaaacaaatactacattcaacagtgttagtctcagaggaaacaa 260

                                                                       
Query: 61  atgtgtgtagcctgtggtgatcgaatttaaacactggctggctgccctttgatcactgac 120
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 261 atgtgtgtagcctgtggtgatcgaatttaaacactggctagctgccctttgatcactgac 320

                                                                       
Query: 121 aggaaggatacctaagggaattttcttgaatgacagaaatgtttttcaatttgaccaggt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggaaggatacctaagggaattttcttgaatgacagaaatgtttttcaatttgaccaggt 380

                                                                       
Query: 181 ttttagttgcatgattatatatatatttaccaaaacttatcagagtatataattgaaa-- 238
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  
Sbjct: 381 ttttagttgcgtgattatatatatatttaccaaaacttatcagagtatataattgaaaat 440

                                                                       
Query: 239 ----tagcc---ttt----tt---ttaaaa-tcatatatacatatcctcaggtagctaga 283
               || |    | |    ||   |||||| |||||||||||||||||||||||||||||
Sbjct: 441 tatatatcagagtatataattgaattaaaaatcatatatacatatcctcaggtagctaga 500

                       
Query: 284 gttttcctccca 295
           ||||||||||||
Sbjct: 501 gttttcctccca 512


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 298
Length of database: 698
Length adjustment: 9
Effective length of query: 289
Effective length of database: 689
Effective search space:   199121
Effective search space used:   199121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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