BAC Information

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BAC

Clone NameMSMg01-172C09
Chromosome11 (Build37)
Map Location 50,286,605 - 50,286,859
singlet/doubletsinglet
Overlap genenone
Upstream geneOlfr1385, Olfr1549-ps1, Olfr1384, Olfr1383, Olfr1382, GA_x5J8B7TT7LR-4113-3651, Olfr1381, Olfr1380, Flt4, LOC100040032, Scgb3a1, Cnot6, LOC666899, LOC100040073, Gfpt2, Mapk9, Rasgef1c, Rnf130, LOC380696, Tbc1d9b, 3010026O09Rik, Sqstm1, Mgat4b, Ltc4s, Maml1, Canx, 1700121K02Rik, Hnrph1, Rufy1
Downstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172C09.T7 (MSMg01no172_c09.b1)MSMg01-172C09.TJ (MSMg01no172_c09.g1)
ACCAG368155AG368156
length751723
length of high quality
(start - end)
259 (43 - 301)235 (75 - 309)
definitionCHROMAT_FILE: MSMg01no172_c09.b1 PHD_FILE: MSMg01no172_c09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:33 2005CHROMAT_FILE: MSMg01no172_c09.g1 PHD_FILE: MSMg01no172_c09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:42:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTGAGCACATTTAAGATGACAGAGGCAAAGACGAGCCCAGGCTTACATG
GGTCAAAATAAGAGCATGGGTGGTTGAAGTTATGGCTTAAGGGAGTGGAA
GGGGAAGGAAGAGAATGGAAATTAGAAAAAAGAGAAAGACCGAGAGACAG
AGACCGAGAGAGAGAGACACAGAAAGAAAGACCCAGAGAAGAGGCAGAGA
GAGAGAGATAGAGACAGCTCATCATTTTAGTTACAAGATTTTTAAAATGA
AAAAGCAGCAAGCAATTTGTTCTCCACCAGATGGATATGTAAATAAAATG
CAGTGTTTANCTACTTTCCCCTATTCTTACCAAATAATAATGAAATTGTG
TGANTTGTAGACAACGGCTAGAATCAAAAAGTTAGTACGCGAACTGTGCT
GCACCAGACACAAGAATACAGGAACTGCTTACTCTTTCATATGTGGAAGA
CTAACAAGACTTACCCTGATTACAGAATACCGACCACTCCCCGCACTGTG
CCGTGTGCGTGTACCATTATGAATGCGTCTGGCCCCTACCACCCGTGTTC
TCTCTCCGACCCCTCCCATCCTGCTTACCTTCCCCCCCCCCCCGCCCTCC
CGGGCTCCTGTCCACCCAGGACCTCATGTCCCCTCCCCTCAGTGCCCCCA
ACTTCCATCCGCCCGCCCCCCCCTCCCCGCCCTCCTTCTTCTCCTTCCCC
T
ATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGACAACCGAATGGCAGA
GAAGCACCTGAAAAAATGCTCACCATCCTTAATCATCAGGGAAATGCAAA
TCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATC
AAAAATTCAGGTGACAGCAGATGCTGGCGTGGATGTGGAGAAAGAGGAAC
ACTCCTCCATTGTTGGTGGGATTGCAGGCTTGTACAACCACTCTGGAGAT
CAGTCTGGCGGCTCCTCAGATTTCTGGATATAGTACTACCGGAGGATCCA
GCAATATCTCNCTGNGTTCCATACAANGCCCATGTCCTAANTGGTAAGAA
GGACACATGCTCCACCACGAACAAAGAAAACATTATTTATTATAGCCTGA
TGCTGGAATTAACCCAGATGCCCCTCATCTGAGGAATGGATACAGACGAT
GTGGTACATCTACACCATGGAGCACTACTCAGCTACTAAAAAGAATGAAT
TTATGAAATTTCCTGTTCAACCGCATGGACCCGTAGGTCTTCATCCTGAG
TGATGTAACACATTCCTAAAGGAACTCTCACATTATGTATTCACTGATAA
GTGGTTATTAGCCCCCCTCTTATTATACTCCAGACTTAATACACCATTTT
CTAATCACTTGATACTCCAGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_c09.b1 MSMg01no172_c09.b1 CHROMAT_FILE:
MSMg01no172_c09.b1 PHD_FILE: MSMg01no172_c09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:42:33 2005
         (259 letters)



>mm_chr11_50286401_50287059
          Length = 659

 Score =  470 bits (243), Expect = e-137
 Identities = 252/255 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgagcacatttaagatgacagaggcaaagacgagcccaggcttacatgggtcaa 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgagcacatttaagatgacagaggcaaagacgagcccaggcttacatgggtcaa 264

                                                                       
Query: 65  aataagagcatgggtggttgaagttatggcttaagggagtggaaggggaaggaagagaat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aataagagcatgggtggttgaagttatggcttaagggagtggaaggggaaggaagagaat 324

                                                                       
Query: 125 ggaaattagaaaaaagagaaagaccgagagacagagaccgagagagagagacacagaaag 184
           |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||||
Sbjct: 325 ggaaattagaaaaaagagaaagacagagagacggagacagagagagagagacacagaaag 384

                                                                       
Query: 185 aaagacccagagaagaggcagagagagagagatagagacagctcatcattttagttacaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 aaagacccagagaagaggcagagagagagagatagagacagctcatcattttagttacaa 444

                          
Query: 245 gatttttaaaatgaa 259
           |||||||||||||||
Sbjct: 445 gatttttaaaatgaa 459


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)