Query= MSMg01no172_l03.b1 MSMg01no172_l03.b1 CHROMAT_FILE:
MSMg01no172_l03.b1 PHD_FILE: MSMg01no172_l03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:13 2005
(615 letters)
>mm_chr11_3956570_3957584
Length = 1015
Score = 942 bits (487), Expect = 0.0
Identities = 517/527 (98%), Gaps = 1/527 (0%)
Strand = Plus / Minus
Query: 5 gaattctagccactcccttgaagaaaataaaaaacaaatctttaaagataccttctcttc 64
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gaattctagccacaccattgaggaaaataaaaaacaaatctttaaagataccttctcttc 467
Query: 65 cacaggtctcttctgcctgtgggccagaggctgacactttgggcttccctgctttctctg 124
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 cacaggtctcttctggctgtgggccagaggctgacactttgggcttccctgctttctctg 407
Query: 125 atgtccctacccctctgccatgtggctgctggtctgtcccgcatgtctcatcccactctg 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 406 atgtccctacccctctgccatgtggctgctggtctgtcccacatgtctcatcccactctg 347
Query: 185 gcttaactcaaatagcacatggcttcttctcttttcttttattttgcctccaccttcctc 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 gcttaactcaaatagcacatggcttcttctcttttcttttattttgcctccaccttcctc 287
Query: 245 ttccagctaagtgcaggatttgtggctcacctgtcctgttccccccacacccccatttct 304
|||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 286 ttccagctaactgcaagatttgtggctcacctgtcctgttccccccacgcccccatttct 227
Query: 305 atttttaaaaagacttcttccctttttaaaagttttttttattgattctctgtgagtttc 364
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 226 atttttaaaaagacttcttccctttttaaaag-tttttttattgattctctgtgagtttc 168
Query: 365 acaccatgcactccaatcccacctgtctccccatctcctcatatccacgctctgcccttg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 167 acaccatgcactccaatcccacctgtctccccatctcctcatatccacgctctgcccttg 108
Query: 425 caaactccctcacaaaagaaaataaaacacacaaacaaaaagtaaaacaaaccaaagcgt 484
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 107 caagctccctcacaaaagaaaataaaacacacaaacaaaaagtaaaacaaaccaaagcgt 48
Query: 485 aggaaacatctcattgcagaagctgtggagtgtcacagtgcgcccca 531
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47 aggaaacatctcattgcagaagctgtggagtgtcacagtgcgcccca 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space: 608025
Effective search space used: 608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no172_l03.g1 MSMg01no172_l03.g1 CHROMAT_FILE:
MSMg01no172_l03.g1 PHD_FILE: MSMg01no172_l03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:13 2005
(648 letters)
>mm_chr11_3783446_3784489
Length = 1044
Score = 1122 bits (580), Expect = 0.0
Identities = 634/660 (96%), Gaps = 16/660 (2%)
Strand = Plus / Plus
Query: 1 agagaagctaggacaatgaaagcagaggaggagcagagaagaatggtatgccagaagaag 60
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct: 201 agagaagctaggacaatgaaagcagaggaggagcagagaagaatggtatg---ga-gaag 256
Query: 61 agaaaggggtgacaaactagaaaatgaaaaggaaaaaagaaagtggtggtgcacacaact 120
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 257 agaaaggggtgacaaactagaaaatgaaaaagaaaaaagaaagtggtggtgcacacaact 316
Query: 121 ttaatcccacacttaggtccctgaagactggaggccgctaggaagacgaaggctgcttct 180
||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||
Sbjct: 317 ttaatcccacacttaggtccctgaagactggagaccgctaggaacacgaagtctgcttct 376
Query: 181 tgttgctgatgctgaacctgtattggacaagtatccaaaaccaggtaaagctgccctcac 240
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 377 tgttgctgatgttgaacctgtattggacaagtatccaaaaccagctaaagctgccctcac 436
Query: 241 ttcagagccaccctcacttttgtggcttctcttctttgtgtaccagacttcctcttcggg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 437 ttcagagccaccctcacttttgtggcttctcttctttgtgtaccagacttcctcttctgg 496
Query: 301 gtttttccacccttctgggactctgcagtcctctggtctccacatgcatgtacaacatac 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 gtttttccacccttctgggactctgcagtcctctggtctccacatgcatgtacaacatac 556
Query: 361 ctatgtaccacccgcaagcatgtacacacacacacaca----------tacataaaaaaa 410
|||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 557 ctatgtaccacccgcaagcatgtacacacacacacacacacatatacatacataaaaaaa 616
Query: 411 --tccagccaacattagcaatcctgtatcagtagcaactgaaatgtaaatggcttcacag 468
|||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 617 aatccagccaacattagcaatcctgtatcagtagtaacttaaatgtaaatggcttcacag 676
Query: 469 ctcaccaataacagaacatgagactagctgataaaacagatcccttgtatttgtcgcctc 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 ctcaccaataacagaacatgagactagctgataaaacagatcccttgtatttgtcgcctc 736
Query: 529 caagaaacatatttcactagcaatgacatccaattacgagtcaatgaaggatggaaatca 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 caagaaacatatttcactagcaatgacatccaattacgagtcaatgaaggatggaaatca 796
Query: 589 attgactaagcaaatggagcctcctgtgtccctgcaaaagcttacatagctacttttgct 648
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 797 attgactaagcaaatggagcctcctgcgtccctgcaaaagcttacatagctacttttgct 856
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1044
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1034
Effective search space: 659692
Effective search space used: 659692
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
