BAC Information

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BAC

Clone NameMSMg01-172M05
Chromosome11 (Build37)
Map Location 92,083,072 - 92,083,374
singlet/doubletsinglet
Overlap genenone
Upstream geneEG664976, Kif2b
Downstream geneLOC382545, LOC100039286, Car10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172M05.T7 (MSMg01no172_m05.b1)MSMg01-172M05.TJ (MSMg01no172_m05.g1)
ACCAG368576AG368577
length7461,346
length of high quality
(start - end)
315 (42 - 356)---
definitionCHROMAT_FILE: MSMg01no172_m05.b1 PHD_FILE: MSMg01no172_m05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005CHROMAT_FILE: MSMg01no172_m05.g1 PHD_FILE: MSMg01no172_m05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:18 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAACTATCTAATTAGTATACTTTGATTTTAAAATGTTTCTACTATACAT
GAGACTCTACCTCAAGACTAGTAACATAAAGACACTAATCAAAGACACTA
ATCAAGGATTGGTCAAAATGAAGCAGTTTATAGTGTTTCCTATCAGGGAA
TCATAAAGCAAGAAATAGAATCAGGTACCAAGTGTTCCATTGCTCTGTTT
ACTCATTGGTGCACATTTGAGTTGGCAAGTTGTGAAGCACAGAATTCCCA
CCCAACCTCTATCCTCATTATTCCACACTAGACTTTAAATTTGCTCAAAT
TATGCTATATATTTATTCCCCCCCCCCCCCTCTACCTTTTAGACAAACTT
TGGCTTTTATAGTCCACCAACAAATAAACAAACAAAAACCAACCAAAGCT
CAATAGATGCCTTTGACCAAGATAAAAGACGTAATGAAATGGAATGTTGT
CTGTGTTTTTATTTTCTATATTGAATGACATGGACTCAGTAACCAACGTA
AGATCCTCAAGTGTCACATGGCTTTTGGAGGAATAGTTAACATTTTCCAC
ACACATTCGTTTTTTACAAGAATGGACATATGGACGTGCTCGCCGCACTT
CTTTAAAAATTGTTGACCCCTCATAACGATATTTTTTCTTTTCTAAGCCA
CTACCTTTTTTTCTAATACCCTTATTAATACGACTTGTTGCGTACA
CAATTGACACGTCGCGGTAAGTGACCTGGGTTGATATCGCTCTGATTCCG
CATAGACAAATCGACGGCGGACGATTCATCATAATAATTCCCCTTCATAA
ATAACACTTTGATGTATGGCGCACGCCGTAAGGTTACAATAACACTAAGA
AATATATGCCAAAATAACATATATCGGCGGTTTAATCCCCTACCGCGTGC
CGCGCGTATTATCTTCTATTAACGACGACTAACCCCGCCTCCTATATATT
ATCATTATTAATCGAATAACCACCCGCACCATTTCTTATTAGCGCTCTAT
TTTTAATAATTTCACTCGAAACACTCGAACACTCTTGCACGTGTTTATAC
AATACACCATAACGCGAGCCCGCGTCGCAAACGGGGTGTAGATGTAGGCG
GGGCGGAGCGCGCGTCATATGTATATATCATACTGTATTNATCCCCGATC
CACTCCATCCTACACTCGTGGAGTAGGACGTTGTGACGCACAGGGTGAAT
TACTTAATAAGATACGAGCCACGCGCGTGGAGCGATCGGTGTGGATGATG
TAGGGCATATGAAATAACACGCAGCGAAAATCGAACGTTCGGGAAAGGGC
GTTCGTGCATTTTTTGTACTTTTCACGCCCCCCACACCGCGACCCCGCCA
CGAGGATAGAGAAAGCGAGCGGAGCGAATTAAGAGCCACGGAATAGTGTA
GCGGGATATGTTGTCCCCCCACCCACACAAAGGGAGGAGAGGAGGAGGTG
TGGATGAAAAGATGGGTGGAGGAGATCTGCGGTATATAAACCGCCCGCCT
TATGTGACGCGGATCTCTGTGTGTTGCGCCGGTGCTGATAAGCTGTACGA
TGTGCGGGATAAACAATGACTTAGAACACCGCGAGAAGTGTGATAGTGGT
ATAAATCACAGGTAAAACCCGCGATACGTATCGTACACACCGCGAGNCGA
TATGCACCGCGCGGCGTATTCAACGCTACCATTATNCCGTTCAAGAGCAC
GAATACCGAATTATGTGNCGCGGTATTAATATATGTCGGTGTCGCGTGAG
ACGGCGGCGCGGTNAGACAAATAACGTACATACGCCGCGAAAAATATACG
TGGGCGTTCATGAATGAAGATACCGTGCGCGGTCAGTGCGTTACATATAA
NACGGTATAGAGTGCCGTGACGAGTATAGATACACGAGCACTACGGTGGA
TAATATGAAGTTAGCGAGGCGACAATAAACGGCGGTTAGTTATAATCACT
ACACGAGGAGTAAGATACAGCGTCATATGTNTGAGGCGATGTGGTGNAGT
TACTCGATAAGATGAGTCGGCTACTGCCACAATGCGGGCATGTAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_m05.b1 MSMg01no172_m05.b1 CHROMAT_FILE:
MSMg01no172_m05.b1 PHD_FILE: MSMg01no172_m05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:18 2005
         (315 letters)



>mm_chr11_92082860_92083574
          Length = 715

 Score =  449 bits (232), Expect = e-130
 Identities = 287/316 (90%), Gaps = 18/316 (5%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactatctaattagtatactttgattttaaaatgtt-----tctactatacat 59
           |||||||||||||||||||||||||||||||||||||||||||     ||||||||| ||
Sbjct: 213 gaattcaaactatctaattagtatactttgattttaaaatgttgggtttctactatatat 272

                                                                       
Query: 60  gagactctacctcaagactagtaacataaagacactaatcaaagacactaatcaaggatt 119
           ||| ||||| ||||||||| ||||||||||||||||||||||             |||||
Sbjct: 273 gaggctctaactcaagacttgtaacataaagacactaatcaa-------------ggatt 319

                                                                       
Query: 120 ggtcaaaatgaagcagtttatagtgtttcctatcagggaatcataaagcaagaaatagaa 179
           |||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||
Sbjct: 320 ggtcaaaatgaagcagtttacagtgttttctatcagggaatcataaagcaagaaatagaa 379

                                                                       
Query: 180 tcaggtaccaagtgttccattgctctgtttactcattggtgcacatttgagttggcaagt 239
           |||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 380 tcaggtaccaagagttccattgctctgtttactcattggtgcacacttgagttggcaagt 439

                                                                       
Query: 240 tgtgaagcacagaattcccacccaacctctatcctcattattccacactagactttaaat 299
           |||||||||||||||||||||||||||||||||||||  ||| |||||||||||||||||
Sbjct: 440 tgtgaagcacagaattcccacccaacctctatcctcacaatttcacactagactttaaat 499

                           
Query: 300 ttgctcaaattatgct 315
           ||||||||||||||||
Sbjct: 500 ttgctcaaattatgct 515


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)