BAC Information

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BAC

Clone NameMSMg01-172P17
Chromosome11 (Build37)
Map Location 56,860,177 - 56,860,432
singlet/doubletsinglet
Overlap geneGria1
Upstream geneLOC100040816, LOC624168
Downstream geneLOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-172P17.T7 (MSMg01no172_p17.b1)MSMg01-172P17.TJ (MSMg01no172_p17.g1)
ACCAG368726AG368727
length731739
length of high quality
(start - end)
271 (38 - 308)259 (374 - 632)
definitionCHROMAT_FILE: MSMg01no172_p17.b1 PHD_FILE: MSMg01no172_p17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:33 2005CHROMAT_FILE: MSMg01no172_p17.g1 PHD_FILE: MSMg01no172_p17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:43:33 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAG
AAGAGAGGACTGGCCTTAGAGATAGCAAAAACCAGGGTTTTATATGAGTC
CTAGCCTCATAGTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTC
TTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTTTCTCTT
TCTCTTTCGCTTTCGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCTCTCCTCCCTCTCTCTCTCTTTCTCCATCTCCCTTTAT
TCTTCTCCGTCCATGTTTATTTCCGTAGGCGCAGGCATAGGCNAAAAAGT
CTATGATTTATCCGGAGGCGGNNCCATTTAATTTTATATAAAGTTAAAGG
GTTGGGGGCCCGCGTAGAAAAGNACCCAAAGAAAGGGGGGGGGGGGGGGG
GGGAAAGAACCTGGGCCCCTTGTCCCGGGACCTTGGGAAGGGGAAGGTTA
TTGGAATGGCCAGAGGGGGGGGGGGGTTTCCTTCTCCATTTTCCCTATTA
CGTAATTTTTGGTCGGGGGACCGGGGTTTTGCTCGAGCATGATGGGGGGT
GGGGATGAGAAGTTTTGGATCGTTTGGGGATGGGGGGTGGCGTTGGGGGG
GGGTGTTGAGGTATGGGGGGGCGGTTGTGTTTCGGCGTAGGGTGTTTTTT
AGGCGTGTGGAATCGGTTCGCGGGCGCGGGG
GGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTCAGCTCTGGCAACTTTTGCATTGGTAAATAATTTG
CCTTTGTCTGGTAACCTTCTGCCGTGGGTGGTAGTACACTGTTCAGGGCA
CCCCCAAAGAGAACAGGCAGCTTGTGGGGCCAGCAAGTTCCTCTCGGTGC
CCTTCAACTTCTTTGCAGGGTGTGAGCTGAAAACCAACTGACTGAAAGAA
TCAAGGGACTGAAGAGCTAGAAAAAAAAAAAGCACCTCAGAGTAAAGTTA
AAAAACAAAAAGGGAAAAAGTGAAGTGTTGTTTGTTAAACTGGGCTAATT
AAGAGTGTAGGCCTCGCAGCTGGAGGTTTTATTAATCTCTTCTGACATCC
TTTGCATCCAGCCTAGCCCATTCAAGCTGCTCAACACACATTAGCCATCA
CCATCATCATCATCATCACCATCACCATCATCATCATCATCGTCGCTAGG
AAGCTAATAAACCACGGGGACTCAGAAGCACTTCTATAGCCCTTCAGATG
GGCTAGCCAGGCAGCACTCATATCTCTAGTCATTCGCTGACTGGTGTGGC
TAAGGAAGCCACTGAGAACAGGAGATTCATAGGAGAGGAAATGACAGGTG
CAGAAGTTCACATGGGGTCTAGTGATACATCACTTATAAAATGCTTGCCT
TGTATGTGTTAGCGACCAAGTTTGATCTCTATAACCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no172_p17.g1 MSMg01no172_p17.g1 CHROMAT_FILE:
MSMg01no172_p17.g1 PHD_FILE: MSMg01no172_p17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:43:33 2005
         (259 letters)



>mm_chr11_56859856_56860514
          Length = 659

 Score =  478 bits (247), Expect = e-139
 Identities = 255/259 (98%), Gaps = 3/259 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggttttattaatctcttctgacatcctttgcatccagcctagcccattcaagctgctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 577 aggttttattaatctcttctgacatcctttgcatccagcctagcccattcaagctgctca 518

                                                                       
Query: 61  acacacattagccatcaccatcatcatcatcatcaccatcaccatcatcatcatcatcgt 120
           ||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||
Sbjct: 517 acacacattagccatcaccatcatcatcatcatcaccatcac---catcatcatcatcgt 461

                                                                       
Query: 121 cgctaggaagctaataaaccacggggactcagaagcacttctatagcccttcagatgggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 cgctaggaagctaataaaccacggggactcagaagcacttctatagcccttcagatgggc 401

                                                                       
Query: 181 tagccaggcagcactcatatctctagtcattcgctgactggtgtggctaaggaagccact 240
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 400 tagccaggcagcactcatatatctagtcattcgctgactggtgtggctaaggaagccact 341

                              
Query: 241 gagaacaggagattcatag 259
           |||||||||||||||||||
Sbjct: 340 gagaacaggagattcatag 322


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 259
Length of database: 659
Length adjustment: 9
Effective length of query: 250
Effective length of database: 650
Effective search space:   162500
Effective search space used:   162500
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)