BAC Information

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BAC

Clone NameMSMg01-173M14
Chromosome11 (Build37)
Map Location 90,914,052 - 90,914,321
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
Downstream geneEG664976, Kif2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-173M14.T7 (MSMg01no173_m14.b1)MSMg01-173M14.TJ (MSMg01no173_m14.g1)
ACCAG369290AG369291
length707727
length of high quality
(start - end)
273 (36 - 308)290 (78 - 367)
definitionCHROMAT_FILE: MSMg01no173_m14.b1 PHD_FILE: MSMg01no173_m14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:31 2005CHROMAT_FILE: MSMg01no173_m14.g1 PHD_FILE: MSMg01no173_m14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:44:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTGTGG
ATTACATAAAATACTGCTGAGTTTGTTCCTGATTTGAGTTTGGCAACTTT
GACCTCTCTACACCTCCTCTTCCTGTTCTACCATGGCATCCATCACAGGC
AGACACAATGGATGCCTAGTTATTTCCAAGTAAAACAGTTTACCCGTATG
CAGTTCGAAACTCCAATTTTTATCCTCACAATTAACCCACTGCACAAAAA
CTGACAGTTAGTTCAACTCTTTCAGAGACTTGTGAAACCTCAAAGGTATT
TGGATCTAGTTATTTCTGTGATTACGGTCTTGTCATCCTTTCTCTTCATT
GGCCTAAGAGGCACATGCTCTGATTCCCACTCTCTTTTACGTTAGCATCT
GCTACCAAACTCACTTGCAACATTTTTCTTGGGTTAAAAAAATCTGACCA
CTGGATTGTCTTCTTGGATTGGATCTTTATGAGAAATCGGAAGCCCTGAT
ACTTGATGTTTCCCTGTATCACAAAATCATATAGCTATGCGTAGCTGTGT
GCAGGTTTGCTATTTCCGACCTGTCCCTTTCATCTACACAGAAATCCCTG
TGTACGTATTGATTTCACCCCTGGCCTGTCACACTACTTGAATGATGAGT
TTATGTCAAAGTAGATAAGACTAAGTTTAGCTCGTTTTGTGTTTGGCATT
TGTTTTT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTTTTAAAGAATGTCAAATCTCTA
AAAAATAAATGAGTGCTTGTTTTGCGGAGATGGCTCAGTTGTCAAGATGC
TATGACATACAAGCTTGAGGACCTGAGTTCGATACCTAAGCACCCAGGTA
AAGAAGCATGGCATGGCAGTATGCACCTGTAATCGCAGTACCAGGGTTAG
AGACAGCAAGTACCCTTGAGATAAAGAGTCCTGCCAGTCAATGAGAACCC
TTACCTCAAAAAATAAAGATAGAGATTGATGGACAAGGACACCTGATGCC
AAATTCTGGATTTTACTTGCTTGCACACACCCACAACACAAGAACATGCA
ATGGCATACATAAATACGGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGGCAGAGAGAGGCAGA
GACAGAGAGACAGAGTGACAGAGACATGCAGAGATGGAGAGAGGCAGAGA
CAGAGACTAAGAGAGACTCACTATAACCAATTGAGCAGTTTCTTTTAAAT
ACAGATGTACTTCCCAGACTTTCTGGAGGTGATAAAGAGCCTCCATAGAC
TGAAGATGACTGAAACTTTGGTGATACTATGACCCCTTTTATCCTATTCT
ATATTATGTTTTATCGGAATCCTGTAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no173_m14.b1 MSMg01no173_m14.b1 CHROMAT_FILE:
MSMg01no173_m14.b1 PHD_FILE: MSMg01no173_m14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:31 2005
         (273 letters)



>mm_chr11_90913848_90914521
          Length = 674

 Score =  462 bits (239), Expect = e-135
 Identities = 263/273 (96%), Gaps = 7/273 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtgga---ttacata-aaatactgctgagtttgttcctgatttgagtttggca 60
           ||||||||||||     ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 474 gaattctgtggacac--acatacaaatactgctgagtttgttcctgatttgagtttggca 417

                                                                       
Query: 61  actttgacctctctacacctcctcttcctgttctaccatggcatccatcacaggcagaca 120
           ||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 actttgacctctcta-atctcctcttcctgttctaccatggcatccatcacaggcagaca 358

                                                                       
Query: 121 caatggatgcctagttatttccaagtaaaacagtttacccgtatgcagttcgaaactcca 180
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 357 caatggatgcctagttatttccaagtaaaacagtttacccatatgcagttcgaaactcca 298

                                                                       
Query: 181 atttttatcctcacaattaacccactgcacaaaaactgacagttagttcaactctttcag 240
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 297 atttttatcctcacaattaacccactgcacaaaaactgacagttagttcaactctttcgg 238

                                            
Query: 241 agacttgtgaaacctcaaaggtatttggatcta 273
           |||||||||||||||||||||||||||||||||
Sbjct: 237 agacttgtgaaacctcaaaggtatttggatcta 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 674
Length adjustment: 9
Effective length of query: 264
Effective length of database: 665
Effective search space:   175560
Effective search space used:   175560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)