Query= MSMg01no174_a21.b1 MSMg01no174_a21.b1 CHROMAT_FILE:
MSMg01no174_a21.b1 PHD_FILE: MSMg01no174_a21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:50 2005
(185 letters)
>mm_chr11_62487443_62488027
Length = 585
Score = 344 bits (178), Expect = 2e-99
Identities = 181/182 (99%)
Strand = Plus / Plus
Query: 4 ggaattcactaggtatatcagattggcttctaactaacaagaaacccagtggcctcttcc 63
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 204 ggaattcactaggtatatcagattggcttctaactcacaagaaacccagtggcctcttcc 263
Query: 64 tcctgcatgttcagattaaggggggcaccacctcacctagccttttgactattactctcc 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tcctgcatgttcagattaaggggggcaccacctcacctagccttttgactattactctcc 323
Query: 124 ttaactttattttcatgttatttagtatattttatgttattggtatttattatattttat 183
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 ttaactttattttcatgttatttagtatattttatgttattggtatttattatattttat 383
Query: 184 gt 185
||
Sbjct: 384 gt 385
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 185
Length of database: 585
Length adjustment: 8
Effective length of query: 177
Effective length of database: 577
Effective search space: 102129
Effective search space used: 102129
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no174_a21.g1 MSMg01no174_a21.g1 CHROMAT_FILE:
MSMg01no174_a21.g1 PHD_FILE: MSMg01no174_a21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:50 2005
(588 letters)
>mm_chr11_62654119_62655106
Length = 988
Score = 1069 bits (553), Expect = 0.0
Identities = 580/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 1 ccaccatcccctaatgtgtatcatgaagacaatgtaaacatttaccccataaagatgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 ccaccatcccctaatgtgtatcatgaagacaatgtaaacatttaccccataaagatgaac 729
Query: 61 taacaaagagaaagcactccaaacgctggagagtgtgtaagaaacacacagcgatgtgtt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 728 taacaaagagaaagcactccaaacgctggagagtgtgtaagaaacacacagcgatgtgtt 669
Query: 121 tgcgatttattatgatccctgtgcagtcttgttatggtttgaagatccctagttggaaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 tgcgatttattatgatccctgtgcagtcttgttatggtttgaagatccctagttggaaat 609
Query: 181 tctggatgacgggtgacagtcacctgagcagacaggagaccctcactagaagatgtgagg 240
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 tctggatgac-ggtgacagtcacctgagcagacaggagaccctcactagaagatgtgagg 550
Query: 241 attgttttttgtgccttacagtttctgcattcatgcaagaactgtcttgagaagcaggca 300
| | |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 agaggcttttgtgccttagagtttctgcattcatgcaagaactgtcttgagaagcaggcg 490
Query: 301 ggaaagttcattcaggacccacacag-ttctaaagccaactaccatcagcaggtatttct 359
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 489 ggaaagttcattcaggacccacacagtttctaaagccaactaccatcagcaggtatttct 430
Query: 360 gtctaccttaaaataccagctgctgcccagttgtcacagttagcaacccctgggaggtag 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 gtctaccttaaaataccagctgctgcccagttgtcacagttagcaacccctgggaggtag 370
Query: 420 atcctagaatctagggagcagcctccacagaggacccagctggcttctcgggctcctctc 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atcctagaatctagggagcagcctccacagaggacccagctggcttctcgggctcctctc 310
Query: 480 ccagatccacaatccggatggcattttctttcttagacagccagaaagcagcatagaccg 539
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccagatccacaatccggatggcgttttctttcttagacagccagaaagcagcatagaccg 250
Query: 540 gctctgagaacttgcagtcaaacttgtgaatcagagtcatagcatcata 588
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gctctgagaacttgcagtcaaacttgtgaatcagagtcatagcatcata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 588
Length of database: 988
Length adjustment: 10
Effective length of query: 578
Effective length of database: 978
Effective search space: 565284
Effective search space used: 565284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
