Query= MSMg01no174_b04.b1 MSMg01no174_b04.b1 CHROMAT_FILE:
MSMg01no174_b04.b1 PHD_FILE: MSMg01no174_b04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:51 2005
(521 letters)
>mm_chr11_103779415_103780335
Length = 921
Score = 907 bits (469), Expect = 0.0
Identities = 510/533 (95%), Gaps = 19/533 (3%)
Strand = Plus / Plus
Query: 1 aagcacttgttgctcttctaaaaggacctaggttcaattcccagcacccacatggtggtt 60
|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 208 aagcacttgttgctcttctaaaaggatctaggttcaactcccagcacccacatggtggtt 267
Query: 61 cacaaccatgaaaccccagtgtcagaggatctggtagcctcttccagcctccatgggcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 cacaaccatgaaaccccagtgtcagaggatctggtagcctcttccagcctccatgggcac 327
Query: 121 caggcacacagatatacatgcaagcaaaacacccatatgcataaaagaaataaaaaacaa 180
||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 328 caggcacacagatatacatgcaagcaaaacacccatatgcata----aaataaaaaac-- 381
Query: 181 aaacaactttttaaaatacaaaaaatatttaaacatgttctctcacatgttttaaaagat 240
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 -aagaactttttaaaatacaaaaaatatttaaacatgttctctcacatgttttaaaagat 440
Query: 241 ctaagttctcctatagacctcatgattgaaatgtatacacaaaagacatacagtactcta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctaagttctcctatagacctcatgattgaaatgtatacacaaaagacatacagtactcta 500
Query: 301 gaccacagaccaaatcaccaagaaaaggcctttaaccaaccttgcaattgagttgtttcc 360
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gaccacagaccaaatccccaagaaaaggcctttaaccaaccttgcaattgagttgtttcc 560
Query: 361 attccccaagtacgtgtttctatagtactcataagacaggcgataaaggggctggagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 attccccaagtacgtgtttctatagtactcataagacaggcgataaaggggctggagaag 620
Query: 421 gggctg-ag------c-----agctaagctatctgcttttccaaatgactcgagttcaag 468
|||||| || | |||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gggctggagaaggggctaagtagctaagctatctgcttttccaaatgactcgagttcaag 680
Query: 469 tccctaccccatactgggtgattcacaactagctgtaaccccagctccagggg 521
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tccctaccccatactgggtgattcacaactagctgtaaccccagctccagggg 733
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no174_b04.g1 MSMg01no174_b04.g1 CHROMAT_FILE:
MSMg01no174_b04.g1 PHD_FILE: MSMg01no174_b04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:44:51 2005
(281 letters)
>mm_chr11_103959202_103959882
Length = 681
Score = 528 bits (273), Expect = e-154
Identities = 279/281 (99%)
Strand = Plus / Minus
Query: 1 actcggggctctgtccccaggcccagtgtgtggtaagcactgtgcatgcagggaccaaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 actcggggctctgtccccaggcccagtgtgtggtaagcactgtgcatgcagggaccaaat 422
Query: 61 gaacttctcttgctcaccatacctgtttcagcacccttccctaccagtacctgcagagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaacttctcttgctcaccatacctgtttcagcacccttccctaccagtacctgcagagag 362
Query: 121 acacagcgggaggcaggaggcgggaggcgggaggcgggccgccacgaacttgttcataaa 180
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 acacagggggaggcaggaggcgggaggcgggaggcgggccgccacgaacttgttcataaa 302
Query: 181 agccgagagcccacgcttgcactgtgttactttaaataacatccgagtgggtctgtttgc 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agctgagagcccacgcttgcactgtgttactttaaataacatccgagtgggtctgtttgc 242
Query: 241 ttggtcctccgacccctacaaaataccacacatgtcagaca 281
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ttggtcctccgacccctacaaaataccacacatgtcagaca 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space: 182784
Effective search space used: 182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
