BAC Information

Click to search

BAC

Clone NameMSMg01-174E10
Chromosome11 (Build37)
Map Location 23,876,854 - 23,877,099
singlet/doubletsinglet
Overlap genenone
Upstream geneCommd1, Cct4, 4930430E16Rik, LOC100042875, Xpo1, LOC100042202, Ahsa2, 1700093K21Rik, A730027B03Rik, 0610010F05Rik, Pex13, 4933435A13Rik, Rel, Papolg
Downstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174E10.T7 (MSMg01no174_e10.b1)MSMg01-174E10.TJ (MSMg01no174_e10.g1)
ACCAG369622AG369623
length712736
length of high quality
(start - end)
162 (109 - 270)246 (77 - 322)
definitionCHROMAT_FILE: MSMg01no174_e10.b1 PHD_FILE: MSMg01no174_e10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:06 2005CHROMAT_FILE: MSMg01no174_e10.g1 PHD_FILE: MSMg01no174_e10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:06 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCATCTGAGGAATATTAA
ATGGCTGAGAAGCACCTAAAAATGTCCAACATCCTTAATCATCAGGGAAA
TGCAACTCAAAACAAATCTGAGATTCCACCTCACACAAGTCAGAATGGCT
AAGATCAAAAATTCAGGTGACAGCAGATGCTGTCGAGGATGAGGAGAAAG
AGGAACACTCCTTCATTGGTATTGCAAGCTGGTACAACCACTCTGGAAAT
CAGTCCGGCAGTTCCTCATAAAGTTGGACATAGTACTATCAGAAGATCCA
GTTTTTACCTCTTCTGGTAACATACTCAGAAGATGTTCTATCTTGTTTTT
AACCCACCTGCTCCACTATGTTCATAGCATCCTTATTTATAATACTCCCC
AAGCTGGAAAGAATCCAGTTGTCTCTCATTTGATCACCAGATTCTGAATA
TGTGTCACTCTCATACAATGGAGCACTACTAAGCTATTATAACCATTGAA
TTTATGAACCTATGACATTCTCATGCTAATGCTTGTATCCGGAGGATATC
ATCCTGAGTGAGGTAATCCTTTTTCCATCGACCTTCTCTGTTTTTCACTC
CCTGATGAGCTGATTTCACCCCATATTCTCACACTATCCTACATACTTTT
TGTTTTTCCCTTGCATTTCTTGACGTTTGTAGATCACAGCGTGTATCCCT
CGTTCTTCTTTA
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACCGAGGTCCCACTGAAAGTGGCT
GCGCAGAACATGTGACACGCATGCCTGCACAGGCACCTGTGTTAATTTTC
AAATGCTTTAGACCTTGAGACGTTTCTGCAGTTTGATTAGAAGGGAAGCC
TAATACCTTCTCTCAAACGCCAAGGTCAGAAAATAGCTAGAGAAAATCTG
CAACCTTTAATTGGACTGTAGCTGAGGCCGCAGGTGTGTGGGTGTCACCT
GGGTTTTTCAGATGTCAGCAGAGAGACTAGATTTGATAGATAGATAACTT
TGCCCTCAACTCCTGTTTTTTTGCTACCCCACCCCCCGCATCGCCTATCC
ATTCACATTGCTTGCAGGTTCCCAGCAAATGTGAATGACAGTCTGTAGAG
TCCAGACAGTTTCATCAGGGGTAACAATTTGCTGAGTGGCCCGGTAAATA
CTATCATGTCATATAGACTCGGCTGCTCACCTGGGGAGTGATCCAGCTTC
CTAGCTTCCTTGCCCTGTGCCCCCCATGATTCTGTGTTATAAATCTTTTA
GCGTTCCAGAGCCAACTATTCTCCCATATATCTATGCTGCGTTAGTTCGC
CCGGTCTTGTTTTTTTCTCATTCTGCCTTCTGCCCCAATTTTTGACCTCT
CTCTTACTTCCCATAAAGTCACCTTTTTCCTGTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_e10.g1 MSMg01no174_e10.g1 CHROMAT_FILE:
MSMg01no174_e10.g1 PHD_FILE: MSMg01no174_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:06 2005
         (246 letters)



>mm_chr11_23876654_23877299
          Length = 646

 Score =  476 bits (246), Expect = e-139
 Identities = 246/246 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accgaggtcccactgaaagtggctgcgcagaacatgtgacacgcatgcctgcacaggcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 accgaggtcccactgaaagtggctgcgcagaacatgtgacacgcatgcctgcacaggcac 387

                                                                       
Query: 61  ctgtgttaattttcaaatgctttagaccttgagacgtttctgcagtttgattagaaggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 ctgtgttaattttcaaatgctttagaccttgagacgtttctgcagtttgattagaaggga 327

                                                                       
Query: 121 agcctaataccttctctcaaacgccaaggtcagaaaatagctagagaaaatctgcaacct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 agcctaataccttctctcaaacgccaaggtcagaaaatagctagagaaaatctgcaacct 267

                                                                       
Query: 181 ttaattggactgtagctgaggccgcaggtgtgtgggtgtcacctgggtttttcagatgtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttaattggactgtagctgaggccgcaggtgtgtgggtgtcacctgggtttttcagatgtc 207

                 
Query: 241 agcaga 246
           ||||||
Sbjct: 206 agcaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 646
Length adjustment: 9
Effective length of query: 237
Effective length of database: 637
Effective search space:   150969
Effective search space used:   150969
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)