BAC Information

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BAC

Clone NameMSMg01-174J20
Chromosome11 (Build37)
Map Location 112,454,858 - 112,455,055
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396, EG667038
Downstream geneLOC100041610, LOC671963, LOC667047, BC006965, Sox9, 2610035D17Rik, Slc39a11
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-174J20.T7 (MSMg01no174_j20.b1)MSMg01-174J20.TJ (MSMg01no174_j20.g1)
ACCAG369859AG369860
length835742
length of high quality
(start - end)
208 (41 - 248)288 (72 - 359)
definitionCHROMAT_FILE: MSMg01no174_j20.b1 PHD_FILE: MSMg01no174_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:31 2005CHROMAT_FILE: MSMg01no174_j20.g1 PHD_FILE: MSMg01no174_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:45:31 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
TGTGGTATAAGATCTTATGAAAAAACTGAAGAGTGGGTGGATCATAAAAC
ATACACACCTTCAACACTGACCCAGAAATATCACCCTCATTTTGACCTTG
GTATTAGGATGTCCAGGTGAAGGCTATATAAAACTGCAGTGCTGTACAAT
TGAGAGCATCAAGTATGTGTGTGTGTGTGTGTATGTGTATGTTTGTGCAC
GTGTATATATGTATATATTTGTCGTTGCTCGTCCTATTATGCCTCCAAAC
GTCTAATGTTGTTAATGGCTTTTTTTTTTTACTGAATCGCCCGCCACACA
AAAAAGATTTTGAGTGCCTCCCAAGACAAAAACCCTTGGTTATTGTTATT
ATTTTTTGGGTTTTGTGCCCCCCCCCAAAAAAATTATAAAAAATCTCTCC
GGTGGGCCGGCCTTTTTAATTCCTAATTTTATCTGTTCATTCCCATTTTA
ATCTCTTATTTAATTGTCATTATCTTTCCCCTCCTTTTTATTTTTTCTTC
TCCCTCTTCACATTATACTATTTACTCGTTTTTTTCTGCTTTCTTTATAT
CTATCGCTTTTCCTCTCCCTCTCGCCTTCCTCTCCTCCCGTTCCTCTTCT
TCTTTTTTCCAGCCCCCCCTCTTCTTGATTTTATTGCAATATTTCTCTCA
TTCTCTCTTATTTTTCTCCTTTCTTTAATTTTTCTCTCCCCCTCCTCGCT
TTCTAACTCTTCCCCCTCTCCCCTATCCTCCCTTTTTTCCTCTCTCTTTT
CCCCCTTTCCCCCTTCATTACTTATCTCCCTTTTG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGAACTGGAATCCAAGCAGGTCAGGATAC
AGAAGCTGATGCAGAGGCCATGGAGTGATGTTTCTTACTGGCTTGCTTCC
CCAAAACAACAGGTAACCAGCCATGTGAAGGAATATACGTTAAACTAATT
GGGTTATCCAAGTTATAATCTAAGTTACAAATGCCCAAGGTATTTGTAAA
TTTATTTTGATTCTGAGTCATATTTAAAGGAACATGGGATTAGGAGGAGC
AACCAAACCAAACTTCAACAATAGCATTCATGGGATGGAGTTCTGGACTG
GATTAAAAAGTATTTTGGTTCCCCCCCCCCCCCATTTATCTCTGTCTCTG
TTTCCTGGCTGTGGACGCAAAGTGACCCCAATCTCCTGAACCCATACCCT
CCTCATTGTGACGGGCTATCCCCTCAAACCCTGAGCCAAATAGCACCTTT
CTCCCTTGGGTTGCTTTTGACTCTGTACCAAGAAAAATACATCTGTCACT
CATTAAGTTTCTCTTCTAGGCCGGTGATGGCATCACCTTACCCTTCTTTC
TTAACCAGCTTGTACCAAGAGATACAGAAAAGAAGCAAGATGCACAGAGG
CAGAAAAGCAACAACTGTGAACTGGATTAGAGGAAGAGTGTGCCTTCCTT
ATGCAGAAGGTAGAAGCACCTCANGTTTACCAGATGTATATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no174_j20.b1 MSMg01no174_j20.b1 CHROMAT_FILE:
MSMg01no174_j20.b1 PHD_FILE: MSMg01no174_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:45:31 2005
         (208 letters)



>mm_chr11_112454683_112455291
          Length = 609

 Score =  286 bits (148), Expect = 5e-82
 Identities = 185/198 (93%), Gaps = 3/198 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctgtggtataagatcttatg-aaaaaactgaagagtgggtggatcataaaacata 63
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 373 gaattctgtggtataagatcttatgaaaaaaactgaagagtgggtggatcataaaacata 314

                                                                       
Query: 64  cacaccttcaacactgacccagaaatatcaccctcattttgaccttggtattaggatgtc 123
            |||||||||||| |||   |||||||||||||||||||| |||||||||||||||||||
Sbjct: 313 aacaccttcaacattgaaaaagaaatatcaccctcattttaaccttggtattaggatgtc 254

                                                                       
Query: 124 caggtgaaggctatataaaactgcagtgctgtacaattgagagcatcaagtatgtgtgtg 183
           |||||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct: 253 caggtgaaggctatataaaactgcggtgctatacaattgagagcatcaagtatatgtgtg 194

                             
Query: 184 tgtgtgt--gtatgtgta 199
           |||||||  || ||||||
Sbjct: 193 tgtgtgtatgtttgtgta 176


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 208
Length of database: 609
Length adjustment: 9
Effective length of query: 199
Effective length of database: 600
Effective search space:   119400
Effective search space used:   119400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)