BAC Information

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BAC

Clone NameMSMg01-175H16
Chromosome11 (Build37)
Map Location 32,623,277 - 32,720,547
singlet/doubletdoublet
Overlap geneFbxw11, LOC666616, 1700008A04Rik
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10
Downstream geneLOC666620, LOC670035, LOC432548, Fgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H16.T7 (MSMg01no175_h16.b1)MSMg01-175H16.TJ (MSMg01no175_h16.g1)
ACCAG370457AG370458
length681726
length of high quality
(start - end)
311 (371 - 681)204 (89 - 292)
definitionCHROMAT_FILE: MSMg01no175_h16.b1 PHD_FILE: MSMg01no175_h16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:33 2005CHROMAT_FILE: MSMg01no175_h16.g1 PHD_FILE: MSMg01no175_h16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:34 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,623,277 - 32,623,587)(32,720,344 - 32,720,547)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAACCCCCCGCCCCTTCTCAGGCAGATGTGAACTAATGGATGCATCC
CATTAATGGTTCATCTGTGTGTGACCGGATATCATTATTTAAAAAGAGGA
AACTCTTGTCTTGAGTGTATGCTCTCTAAACGACTTAAAAACTAATCTTT
TACGGAGGGCTCAATAATTTTAAACCATTGCTACATAAAGTTTAAGAATT
AATTGACCTATTGTTCAAAACTTGGACTAATGTCCTGCAGTGCTTAGTGG
GTGACATAGAGCAGACTGTCATTACAGGTTAGGGTTTGTGCATTTCAGAA
TTTTAAGAGGCTGCACCAAGGGTCAGTGCACCAAGACAGTGTGTATATGC
ACATCTTGGAAATGCCCTTCTGTTCTTTGGCAGGGGTAACTGCTGAGAGA
CTCTCCTACTTTCCATGAGTGGTCTCAAGAAAGCATTCCTTCTGAGGGGA
TGTTGTTTAAAGCTGTTCATTAATAAACAGGAACTGGGGAGAACCTTTAT
CAGATTGAGGTTTGGTGATGTAGATTATTTAGTCATCATGACTACCGTTA
TAATTGACAGTATGACAGCACTTACCATAACCATTTCCTCAGGCTGAAAA
AATACTTTAGAGTTAGCAAAGGAGGCAGATG
CCTTTTTCCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGCTCGATGCC
CTTCTGGGAGATCTGCGCCCAGAGGATCCCTGCTTCACCTAAAAGGTCAT
TTGTGAAGGGCAGGTGCCTGGACCTGGGGAGCAGAAGAGGAGGTGATGAT
GTCAGGCTCTGACACTTGCTGCTCCAGGCAGGCTGGAGAAAATAAAGTGA
CTGAGAGGTGACATGTGCAGCTCACTGCTCCTGTTATGGGCACTGAGGAA
GAACAGAGGGACTGTGGGGCAGGGGTCCATGCTGTGAGCTCATTTCTTCT
TTTCAACTTACTGGAAACTTNATGTTTATTTCCTTAATCTCTCACTTTAA
AAAAATGTATGTACATATGTATGCGCCTATGTGCATATTCACGGCCATAT
GCATGTGTGTATACGCATAGCATTTGTTCATATATGAACCCATGCCCACT
TACCTGCCAGCCCACATGTTACTACATTCTTCACATGTGTATTCCTCTGT
GTATGAACGTTTTTGCGTGTGCTCACATGGATGCTTAGGTCTGCGAATGC
CTGTATGTGCAAACCATGAGCCTCCACCGACTTTATATCTGCCCGTGCTG
CTAGGAACACCTTGCTACTACTTTTTGACTTTCCGACTAATGTACTTGCC
TGTACCTGCCTGAACGACTACAGACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h16.b1 MSMg01no175_h16.b1 CHROMAT_FILE:
MSMg01no175_h16.b1 PHD_FILE: MSMg01no175_h16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:33 2005
         (311 letters)



>mm_chr11_32623077_32623787
          Length = 711

 Score =  601 bits (311), Expect = e-176
 Identities = 311/311 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggtcagtgcaccaagacagtgtgtatatgcacatcttggaaatgcccttctgttctttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggtcagtgcaccaagacagtgtgtatatgcacatcttggaaatgcccttctgttctttgg 260

                                                                       
Query: 61  caggggtaactgctgagagactctcctactttccatgagtggtctcaagaaagcattcct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caggggtaactgctgagagactctcctactttccatgagtggtctcaagaaagcattcct 320

                                                                       
Query: 121 tctgaggggatgttgtttaaagctgttcattaataaacaggaactggggagaacctttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctgaggggatgttgtttaaagctgttcattaataaacaggaactggggagaacctttat 380

                                                                       
Query: 181 cagattgaggtttggtgatgtagattatttagtcatcatgactaccgttataattgacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagattgaggtttggtgatgtagattatttagtcatcatgactaccgttataattgacag 440

                                                                       
Query: 241 tatgacagcacttaccataaccatttcctcaggctgaaaaaatactttagagttagcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tatgacagcacttaccataaccatttcctcaggctgaaaaaatactttagagttagcaaa 500

                      
Query: 301 ggaggcagatg 311
           |||||||||||
Sbjct: 501 ggaggcagatg 511


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no175_h16.g1 MSMg01no175_h16.g1 CHROMAT_FILE:
MSMg01no175_h16.g1 PHD_FILE: MSMg01no175_h16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:34 2005
         (204 letters)



>mm_chr11_32720144_32720747
          Length = 604

 Score =  395 bits (204), Expect = e-114
 Identities = 204/204 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tggctcgatgcccttctgggagatctgcgcccagaggatccctgcttcacctaaaaggtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 tggctcgatgcccttctgggagatctgcgcccagaggatccctgcttcacctaaaaggtc 345

                                                                       
Query: 61  atttgtgaagggcaggtgcctggacctggggagcagaagaggaggtgatgatgtcaggct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 atttgtgaagggcaggtgcctggacctggggagcagaagaggaggtgatgatgtcaggct 285

                                                                       
Query: 121 ctgacacttgctgctccaggcaggctggagaaaataaagtgactgagaggtgacatgtgc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ctgacacttgctgctccaggcaggctggagaaaataaagtgactgagaggtgacatgtgc 225

                                   
Query: 181 agctcactgctcctgttatgggca 204
           ||||||||||||||||||||||||
Sbjct: 224 agctcactgctcctgttatgggca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 204
Length of database: 604
Length adjustment: 8
Effective length of query: 196
Effective length of database: 596
Effective search space:   116816
Effective search space used:   116816
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)