BAC Information

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BAC

Clone NameMSMg01-175H18
Chromosome11 (Build37)
Map Location 73,740,721 - 73,741,360
singlet/doubletsinglet
Overlap genenone
Upstream geneAtp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395
Downstream geneOlfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik, Pafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-175H18.T7 (MSMg01no175_h18.b1)MSMg01-175H18.TJ (MSMg01no175_h18.g1)
ACCAG370461AG370462
length682732
length of high quality
(start - end)
645 (38 - 682)286 (89 - 374)
definitionCHROMAT_FILE: MSMg01no175_h18.b1 PHD_FILE: MSMg01no175_h18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:34 2005CHROMAT_FILE: MSMg01no175_h18.g1 PHD_FILE: MSMg01no175_h18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:46:34 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTT
GGTTTCTTATATGTGTTTTAATATTTTATCCTTTAAATTCTCCTCTTATC
TGAGATACAATATACGTTGGCTTTCTCTTATTTCTGAGTTGGTTATGTGG
CCTCAGTGATTATGATTTGGTTCACTTCTGCAAGTTTCTTGCATTTCAAA
GTTCTTTAGGCCTTATTGAAGATTGTCTTATTTTATGATTATAAATCTTC
AGCAATGAGAACTTCGTGTAATGGCTTACATAACAACTTAAGACTCAGGT
TGGATTTCTATCTTATCCTCAGAACTCTGATTTCTAAGGATGATTGTTTT
TTTCTCTACAATGTGCTGCAGACCTTGTAAACACAGCAGATTCCAAACAA
AACTCCCATATTCAGATCCTCCCTCTGCTATCCCATCATTCTTCACTCTT
CCATATCATTCAAAGTAATCTGTGATCAAAGATGAAATCTGATAGTTTTA
TTTCATTCATTCATTTCTTTCACTATTATACTCCATTAATAAATGCTATA
GATACTGAAGTTCATATTTTATTTATCCTAATTGTTACTAAGAAATTATT
ATCCCACTTGAACTATTGTATCCACATCTCAATTTACTCTGATTCTGAAC
CCCCATACATTCTTAAAAGAGCTTTGTTTTGC
CCTCCCCCCCCCCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAGTTCTGTTCCA
TTGATCTAACTGTCTGGCTCTGTACCAATACTGTGTGGGTTTTTTGTTTG
TCTTTGTTTGTTTGTTTGTTTGTTTGTTTGTTTTTAAATCACTATTACTC
TGTAGTAGAGCTTGAGGTCAAGGATGGTGATTTCCCCCAAGAAGTTCATT
TATTGCTGAGAATTGTTTTTGATATCCTTGTTTTTTTTCTTTTGATATTC
CAGCTGAATTTGTGAATTGCTATTTATATCTCTGTGAACAACTGAGTTGC
AGTTTTTGTCATACAGATATTTCTTTTAGAGTTACACCAAGATAATTTAT
TCAATTTGTGACTAATGAGACGCTATTTCTTCCCCAATTTTTTTCTCAGC
CCATTTATCTTTTGTGTAGAGAAAGGCTACTGGTTTGTTTGAATTAATTT
TATATCCAACCCCTTTGCTGAAGTTGTTTATCAGCTGTAGGAGTTTCTCT
AGTGAAATATTTGGCATTGTTTATGTATACTATCATATCACCGGCAAATA
GTGATATCTTGACTTCTTCCTTTTCAATTTGTATCTTTTTCCCCTCCCCT
TTGCTGTTCAACTGCTCTGCCTATAAAGTTTTTTCCTACGCCGAATAAAC
ACCCAACACAGCGCATACCCCTGTCTTTGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no175_h18.b1 MSMg01no175_h18.b1 CHROMAT_FILE:
MSMg01no175_h18.b1 PHD_FILE: MSMg01no175_h18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:46:34 2005
         (645 letters)



>mm_chr11_73740517_73741560
          Length = 1044

 Score = 1154 bits (597), Expect = 0.0
 Identities = 630/643 (97%), Gaps = 5/643 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctttggtttcttatatgtgttttaatattttatcctttaaattctcctcttatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 gaattctttggtttcttatatgtgttttaatattttatcctttaaattctcctcttatct 785

                                                                       
Query: 65  gagatacaatatacgttggctttctcttatttctgagttggttatgtggcctcagtgatt 124
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 gagatacaatatacgttgactttctcttatttctgagttggttatgtggcctcagtgatt 725

                                                                       
Query: 125 atgatttggttcacttctgcaagtttcttgcatttcaaagttctttaggccttattgaag 184
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 atgattttgttcacttctgcaagtttcttgcatttcaaagttctttaggccttattgaag 665

                                                                       
Query: 185 attgtcttattttatgattataaatcttcagcaatgagaacttcgtgtaatggcttacat 244
           |||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 664 attgtcttattttatgattataaatcttcagcaatgagaaattcatgtaatggcttacat 605

                                                                       
Query: 245 aacaacttaagactcaggttggatttctatcttatcctcagaactctgatttctaaggat 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 aaaaacttaagactcaggttggatttctatcttatcctcagaactctgatttctaaggat 545

                                                                       
Query: 305 gattg--tttttttctctacaatgtgctgcagaccttgtaaacacagcagattccaaaca 362
           || ||     ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 gaatgaa---ttttctctagaatgtgctgcagaccttgtaaacacagcagattccaaaca 488

                                                                       
Query: 363 aaactcccatattcagatcctccctctgctatcccatcattcttcactcttccatatcat 422
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 487 aaactcccatattcagatccttcctctgctatcccatcattcttcactcttccatatcat 428

                                                                       
Query: 423 tcaaagtaatctgtgatcaaagatgaaatctgatagttttatttcattcattcatttctt 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcaaagtaatctgtgatcaaagatgaaatctgatagttttatttcattcattcatttctt 368

                                                                       
Query: 483 tcactattatactccattaataaatgctatagatactgaagttcatattttatttatcct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcactattatactccattaataaatgctatagatactgaagttcatattttatttatcct 308

                                                                       
Query: 543 aattgttactaagaaattattatcccacttgaactattgtatccacatctcaatttactc 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aattgttactaagaaattattatcccacttgaactattgtatccacatctcaatttactc 248

                                                      
Query: 603 tgattctgaacccccatacattcttaaaagagctttgttttgc 645
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 tgattctgaacccccatacattcttaaaagagctttgttttgc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1044
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1034
Effective search space:   656590
Effective search space used:   656590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)