Query= MSMg01no176_m07.b1 MSMg01no176_m07.b1 CHROMAT_FILE:
MSMg01no176_m07.b1 PHD_FILE: MSMg01no176_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:56 2005
(663 letters)
>mm_chr11_43795711_43796772
Length = 1062
Score = 1212 bits (627), Expect = 0.0
Identities = 654/663 (98%), Gaps = 1/663 (0%)
Strand = Plus / Plus
Query: 1 ggtagcccaaaggcccctgggcctctacttcctcctgtcctaaccttaggaaattattgt 60
||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct: 201 ggtagcccaaaggcccctgggcctctatttcctcttgtcctaaccttaggaagttattgt 260
Query: 61 gggggcatcaagagagggcactggtctcagaagccactgatcttgaccagtctgccatta 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gggggcatcaagagagggcactggtctcagaagccactgatcttgaccagtctgccatta 320
Query: 121 tttcagggttaattgaggcactcaaagctcttacacctggaaagttcaaagcaagggcta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttcagggttaattgaggcactcaaagctcttacacctggaaagttcaaagcaagggcta 380
Query: 181 gagcccagtcctcctccccccacttcccaaactcagaagctccatcaactcatttcaagg 240
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagcccagtccccctccccccacttcccaaactcagaagctccatcaactcatttcaagg 440
Query: 241 ttgcaaatctacatttgtctctatagtttaatgtttttagccactgagcagccatttctg 300
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttgcaaatctacatttgtctctatagtttaatgtttt-agccactgagcagccatttctg 499
Query: 301 cctgctttcttgccccctcttcccacacctcccactcaagttagcacataccttatacca 360
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cctgctttcttgccccctccccccacacctcccactcaagttagcacataccttatacca 559
Query: 361 gcatcggactctgtgaaagccagctactacttaataaaaacatcctgctcaaaagaggag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gcatcggactctgtgaaagccagctactacttaataaaaacatcctgctcaaaagaggag 619
Query: 421 taataaaagtgaggactattttaaataataacagtgaattatgacttcctttatatttat 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 taataaaagtgaggactattttaaataataacagtgaattatgacttcctttatatttat 679
Query: 481 taggacaacactgtaaatgggaaattgttgtgctgtccttagggagatgaagaatttatt 540
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 680 taggacaacactgtaaatgggaaattgttgtgctgtccttagggagatgaaaaatttatt 739
Query: 541 ttcatgggaatcccattgtagtctcccattagagatctctttgctgggaaggaactgagc 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 740 ttcatgggaatcccattgtagtctcccattagagatctctttgctgggaaggaaccgagc 799
Query: 601 tcatgggccaatacatttacggtcttcttgagaccctttgccatgccgatggactggagt 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 800 tcatgggccaatacatttacggtcttcttgagaccctttgccatgccgatggactggagt 859
Query: 661 cat 663
|||
Sbjct: 860 cat 862
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 663
Length of database: 1062
Length adjustment: 10
Effective length of query: 653
Effective length of database: 1052
Effective search space: 686956
Effective search space used: 686956
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no176_m07.g1 MSMg01no176_m07.g1 CHROMAT_FILE:
MSMg01no176_m07.g1 PHD_FILE: MSMg01no176_m07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:48:56 2005
(284 letters)
>mm_chr11_43919616_43920299
Length = 684
Score = 534 bits (276), Expect = e-156
Identities = 282/284 (99%)
Strand = Plus / Minus
Query: 1 atctacatacgataaaagcagacttcttatgttaccttgtgcaacacaagctggggagcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 atctacatacgataaaagcagacttcttatgttaccttgtgcaacacaagctggggagcc 425
Query: 61 taacaatatttgtcttgatggagatgctgagccatgtagctggtcagctcaccatgctga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 taacaatatttgtcttgatggagatgctgagccatgtagctggtcagctcaccatgctga 365
Query: 121 atgccctggcagctacagtctggcactgaagccctggaggactcctgtagagtgtggctg 180
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 gtgccctggcagctacagtctggcactgaagccctggaggactcctgtagagtgtggctg 305
Query: 181 gtttccattcatattgtcaggccaaagaggtcaggttctggtggcaatgaaggatgacta 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 304 gtttccattcatattgtcaggccaaagaggtcaggttctggtggcaatgaaggatgtcta 245
Query: 241 cagcagtgacaacagtaatggagacagactggcacaccaaatag 284
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cagcagtgacaacagtaatggagacagactggcacaccaaatag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space: 185625
Effective search space used: 185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
