MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-176P03
Chromosome	11 (Build37)
Map Location	115,794,115 - 115,794,237
singlet/doublet	singlet
Overlap gene	Recql5
Upstream gene	Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e, Cd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, 2210020M01Rik
Downstream gene	Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2, Trim47, Trim65, Mrpl38, Fbf1, Acox1, 2310004N24Rik, Cdk3, Evpl, Srp68, Galr2, Exoc7, Foxj1, LOC668255, 1110014K08Rik, Qrich2, Prpsap1, LOC629971, Sphk1, Ube2o, Aanat, Rhbdf2, Cygb, OTTMUSG00000003947, 1810032O08Rik, St6galnac2, LOC634720, BC018473, St6galnac1, Mxra7, Jmjd6, 1110005A03Rik, LOC100043293, Sfrs2, Mfsd11, Mgat5b
Link	Open Mouse BAC browser

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BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-176P03.T7 (MSMg01no176_p03.b1)	MSMg01-176P03.TJ (MSMg01no176_p03.g1)
ACC	AG371491	AG371492
length	1,310	1,166
length of high quality (start - end)	54 (131 - 184)	126 (133 - 258)
definition	CHROMAT_FILE: MSMg01no176_p03.b1 PHD_FILE: MSMg01no176_p03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:20 2005	CHROMAT_FILE: MSMg01no176_p03.g1 PHD_FILE: MSMg01no176_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:20 2005
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	CCCCCAAACATTTGGCGCTAAAGATTACTATAGGGAGAGGATCCGCGGAA TTCTTATCATGGNCTNGGACCCTTAGGAGCCCCCGGGAGNGNANGNGNGA AGGNATNNTGCTTTAAAATTCCTTCTCCGTGAGAGGTAGGGAGAGGGTCC TGACTCACAGGATCAGGTAGGTCAAAAGCTACCAGCCAGCACCTCCTGTG AAGGGAGGGCCAGAGCAGGAGGGGTCAGGTAAGCCTGGGCTATCTCCCTT GTTTTACAGACAGGACAAAAAATGTACTAGTAAGACCACTAACACAATAG GAGAGCCTGGGTGTCTGACTCCAGAAGCCTTCTTCCCCTCAGCAGGCTGC CATGCTATCCACAGCTCTCTGGCTGCCAGGGCAGCGCTATCTTCATGAGT TTCCTTTTTTCTTGCTGGCTTCCTTCCACCCAGTCTCGTTGTTCTAGTCT CCTCTGCTTTGCTCCCTTGCCCACTGACTGACTTTTCAGTATAGTATAAG CACATTGGGAAATAAGACGACACTGGACTGTTGCACTCCTCACTCAGACC TCTGAGCTTGACTTTTGTGGTGTTGGGTAAGATAACATAATTTTCTACTA CTCTACCTACTTCTTACACTCTTTCCCTATCTTTCGTCTCTCAACTCCCA TTCATCTATTTTTATCTTATCCTTATTAATTCCCTCTATCCATTTTTCTC CATCTCACTTTAACATATAGTCCTATTGATCTTCTTTTTTTATCTTTTCT ATTTTCTTCCCTTATTATTTATCCCGCTCTCCTGATTTCTTTATTTTTCA CACTAACGCATTCTGACTCTTTACCCAAAATTTCATCTTCTTTTATTTCC TCATTTACCATCTTATTTCTCACTTCGTCTCTCTATCTCTTCATCTTCCT CCATTTTTTTTTCTCCTTTTTCTTCTCTTCATTTCTAGGCTTTCTCATTT ATCATCTCTCCACCCCTTTTCCCCATCTACTTCTTACTGCATTTTCCCTA CCTTTCCATATCTTTTATCCATTTCTCTTTACCCTCTAATATTCTATCCC TATCCTCTATCCTTTTATAATCATTCTAACTATATCTCTCCCACTCCCCT CTCTCTTTTCCCTTCTCTTTCTCCATTTTAGCTCCCTCTATTTTCCTCCT TCTACCTGTCACTCTCCTTCACTCCTCTCCAACTTCCTTTATCCCTTACT ACACTTCTTCACATCCATATACCTTACTTCAACACTTCACACTTCTTCGT CTTCTACATCCTCCTTTCTTCTATTTTCTCATCATTAACTCTTATTCTCT CATAAATCTA	CCTTTAAAAGCCCGNNNNAAAGANNNNAAAGGGNGAGGACTTAAAGAGTT CCCCGCCGNNGNGNNAAGAGCTACAACGGNACCGCCAGCAGACTGCAAAA CAGGTAGCTCCCCCTGTTACCTTTCACTACAGCCATGGTCGCACTCTCTT GTAAAGGTGTTTTAAAAGAATCAAACCCAAAGACTTTCTTCAGGGTGCTC CGGACTCGCCGCTCCCGGTCGAAAGAAGTGGAGAAAGGACGGGCGCTCAT CTTTGTATTTAGCAGCAGCCAAAAGGTTAACGCAAAGGTGGGCAAAGGAA ATCCCGAAAAAACCCTCTGCTCCACGTTTTTTTTTTTTCTATGCCTCTCC TGCCGAGTAAATTGATATGATACACTTACATATTTTTTTTCCCCCCCCCC CAAGGGAAGGCTGATTTGATAAAAAAAAGAGAGTCCTGAGGTATTAACAT TACTTCTCCCTTTATTAAAAATAATAACAATGAACTTCCCAGGTCAGGTG GATTAGATCTACATACTGGACCACAATATAGCCCATCAATGTCTCTCTTA GTCGATCATATAACTTGCAATCCTTTTTCTAGGGTCCCTTGTTTTATAAC CGAAGTTATACATACCATCCTTCAGGTATTCCGATTCCCCCGTTCCTTCT CTAAATCCCATATTCAACATCTCTCACCCTTTTCCCTATCAATGATCTCC AAAATGAACAGATCACTTTTTTTTCTTTCATTGCCCTCTTCTTCTTTTCT TAAAACATTAATTCTCTATTCCATACTTACAAAAACATCCCTCCTAAATT TACTTATATATACTACACTAAACACCCCACTACTCTATTCTGTCTTATTA ACTTTCTAAAATCCTATCTTTATTTCTCTCTCCTATAACCTTACATAATC CTTCAAACCTTCATTTCACTACCACATTTTTTATCTATTTTAATCACCTC CAATTCTTTATAACATCCCAACTTTACTTTAATATTTTTCTTTTCTACAT ATCTTCTCATTCTCTTTTCTCTTTTATCTCACTCTTTCTCTTACTTTATA CAGTTTTCTCTACACATTATTATCTAATATCATTCTTCTTAAACATTACT TCTTTCTTGATTCTTACGCTCTCCTCTATTCTCTCACTCAATATCCATCT TACACTTCTCCATCCT
quality values	Open. 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Hide. 7 7 7 8 7 7 7 7 12 12 8 8 7 3 0 0 0 0 3 25 23 23 3 0 0 0 0 3 23 23 23 23 3 0 3 27 15 7 7 6 10 6 6 6 6 6 6 6 6 8 8 9 8 8 8 10 13 3 0 0 3 0 3 0 0 3 10 15 30 30 30 18 17 9 9 9 7 10 3 0 3 23 23 37 39 37 34 28 19 19 12 14 14 29 26 36 36 34 32 28 28 33 37 39 34 29 16 11 9 11 11 11 12 11 12 20 18 37 26 24 21 18 18 18 12 12 12 21 22 22 32 20 20 20 32 32 35 35 30 30 36 36 36 39 43 48 57 48 43 43 35 35 35 32 32 28 23 23 28 31 31 30 25 25 25 28 30 37 37 37 37 43 32 32 30 32 25 32 28 25 25 36 36 44 32 44 32 30 28 37 36 32 24 20 20 24 26 28 18 28 28 23 28 30 32 39 31 28 18 18 17 22 22 28 28 28 23 28 28 30 26 26 19 19 15 13 10 9 9 10 10 18 28 25 34 34 37 33 28 21 16 12 11 11 11 23 22 37 37 39 36 35 29 15 10 8 8 8 10 11 11 11 15 12 15 11 12 11 12 12 21 19 28 28 23 23 23 24 28 29 28 19 18 14 14 14 21 15 14 17 15 18 13 13 13 19 19 15 15 15 24 26 28 23 20 15 15 12 15 12 24 19 25 25 33 34 39 39 35 39 35 23 23 14 14 11 18 11 11 11 14 16 30 37 21 18 12 14 12 22 21 17 10 8 8 8 15 17 31 24 24 23 26 23 19 19 15 12 12 10 10 9 8 8 8 8 10 15 11 11 13 11 16 11 9 9 12 9 9 9 9 11 12 27 24 27 26 26 20 18 10 10 9 9 9 16 16 26 21 15 13 16 16 9 9 9 27 20 24 16 17 8 8 8 8 8 8 13 11 11 11 13 12 14 9 9 9 12 12 8 8 8 8 8 8 10 25 28 13 13 13 13 13 19 21 24 15 13 11 18 17 25 25 28 32 28 23 23 23 28 28 19 19 11 11 11 12 16 10 12 12 9 10 9 10 8 8 8 8 10 18 13 12 9 8 10 8 11 11 15 18 15 19 13 12 12 10 10 10 8 8 8 10 10 10 15 13 13 13 18 12 12 10 10 10 8 10 10 10 11 16 15 12 11 10 10 10 10 11 11 11 10 8 8 6 6 8 10 10 10 10 10 17 11 11 11 17 13 10 10 10 16 11 11 11 12 12 12 15 21 22 22 14 10 8 15 19 24 19 19 10 11 11 16 16 20 20 20 12 12 10 12 10 10 10 10 14 14 9 8 8 8 9 9 8 8 6 6 8 8 11 10 10 10 10 10 10 10 10 11 8 8 8 8 8 8 11 11 11 11 11 11 9 9 9 9 10 10 10 10 10 9 9 9 9 9 10 13 8 8 8 8 8 8 8 12 10 14 8 10 10 8 8 8 8 10 10 8 10 9 8 8 10 10 11 8 8 8 7 6 8 8 9 12 10 9 9 8 8 8 8 8 8 10 10 11 12 18 15 17 18 16 15 11 11 11 12 16 11 11 10 10 8 14 13 11 10 10 10 8 8 8 8 8 8 8 8 8 8 10 18 12 10 10 12 12 13 13 9 9 10 10 8 8 8 8 8 8 8 8 10 10 10 14 10 10 12 10 10 8 8 8 8 8 8 8 8 8 8 8 12 13 9 9 9 9 9 8 9 10 9 9 6 8 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 10 11 11 10 10 10 10 10 10 10 10 11 10 10 10 10 8 8 8 8 8 8 12 12 12 8 8 8 8 8 8 10 11 10 9 15 12 11 10 10 10 11 10 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 8 10 7 7 8 8 8 6 7 8 10 10 10 10 10 11 11 8 8 6 6 8 8 10 14 14 16 12 10 9 9 9 9 10 9 9 10 9 9 9 9 9 10 8 8 8 8 13 8 8 10 13 10 10 12 11 12 10 9 9 9 8 8 8 6 6 8 8 6 6 8 8 10 10 10 8 8 8 8 8 8 8 8 8 8 8 10 10 10 10 12 11 9 9 8 8 8 8 8 8 10 13 10 10 12 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 12 12 8 8 12 10 9 9 10 8 13 9 9 9 12 10 9 8 8 10 8 8 8 8 8 6 7 8 8 8 9 10 12 12 10 8 8 8 8 8 8 8 8 6 6 8 8 11 14 11 10 10 10 8 8 8 8 8 8 8 8 8 10 10 8 7 10 7 7 8 8 10 10 10 10 11 11 11 11 15 12 11 9 10 12 9 9 9 8 8 8 14 13 14 10 10 10 8 8 8 8 8 9 9 10 10 11 10 10 10 10 10 8 8 6 6 10 10 8 7 6 8 8 8 8 8 8 8 8 11 13 10 8 8 8 8 8 10 10 13 8 8 8 8 8 11 16 11 8 8 8 8 10 8 8 8 8 8 8 8 8 12 13 10 8 8 8 8 8 10 10 13 12 9 8 8 8 8 8 8 8 8 10 11 8 8 8 8 8 8 8

Alignment Information

BAC End 1	BAC End 2
	Query= MSMg01no176_p03.g1 MSMg01no176_p03.g1 CHROMAT_FILE: MSMg01no176_p03.g1 PHD_FILE: MSMg01no176_p03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 19:49:20 2005 (126 letters) >mm_chr11_115793915_115794440 Length = 526 Score = 223 bits (115), Expect = 4e-63 Identities = 121/123 (98%) Strand = Plus / Plus Query: 1 ccatggtcgcactctcttgtaaaggtgttttaaaagaatcaaacccaaagactttcttca 60 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 201 ccatggtcgcactctcttgtaaaggtgttttaaaagaatcaaacccaaagactttcttca 260 Query: 61 gggtgctccggactcgccgctcccggtcgaaagaagtggagaaaggacgggcgctcatct 120 \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| Sbjct: 261 gggtgctccggactcgccgctcccggtcgaagggagtggagaaaggacgggcgctcatct 320 Query: 121 ttg 123 \|\|\| Sbjct: 321 ttg 323 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.34 0.600 1.10 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 2, Extension: 1 Number of Sequences: 1 Number of Hits to DB: 6 Number of extensions: 1 Number of successful extensions: 1 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1 Number of HSP's successfully gapped: 1 Length of query: 126 Length of database: 526 Length adjustment: 8 Effective length of query: 118 Effective length of database: 518 Effective search space: 61124 Effective search space used: 61124 X1: 7 (13.9 bits) X2: 517 (999.5 bits) X3: 517 (999.5 bits) S1: 7 (14.4 bits) S2: 7 (14.3 bits)

BAC End 1

BAC End 2

Query= MSMg01no176_p03.g1 MSMg01no176_p03.g1 CHROMAT_FILE:
MSMg01no176_p03.g1 PHD_FILE: MSMg01no176_p03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:49:20 2005
         (126 letters)



>mm_chr11_115793915_115794440
          Length = 526

 Score =  223 bits (115), Expect = 4e-63
 Identities = 121/123 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccatggtcgcactctcttgtaaaggtgttttaaaagaatcaaacccaaagactttcttca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ccatggtcgcactctcttgtaaaggtgttttaaaagaatcaaacccaaagactttcttca 260

                                                                       
Query: 61  gggtgctccggactcgccgctcccggtcgaaagaagtggagaaaggacgggcgctcatct 120
           ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 261 gggtgctccggactcgccgctcccggtcgaagggagtggagaaaggacgggcgctcatct 320

              
Query: 121 ttg 123
           |||
Sbjct: 321 ttg 323


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 126
Length of database: 526
Length adjustment: 8
Effective length of query: 118
Effective length of database: 518
Effective search space:    61124
Effective search space used:    61124
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

no map image available.

BAC End Information

Alignment Information