Query= MSMg01no177_i10.b1 MSMg01no177_i10.b1 CHROMAT_FILE:
MSMg01no177_i10.b1 PHD_FILE: MSMg01no177_i10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:07 2005
(540 letters)
>mm_chr11_11776196_11777135
Length = 940
Score = 961 bits (497), Expect = 0.0
Identities = 526/539 (97%), Gaps = 9/539 (1%)
Strand = Plus / Plus
Query: 8 gaattcctcatgccg--cctgtagaaggcaacttgggcagagtttctcaagttcaatcat 65
|||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcctcaag--gtacctgtagaaggcaacttgggcagagtttctcaagttcaatcat 262
Query: 66 cctatactttctgtctgaatttcacctcattatcattacagtaaacagacttcctgtttg 125
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 263 cctatactttctgtctgaatttcaccccattatcattacagtaaacagacttcctgtttg 322
Query: 126 tgcttcaatatctttgctagtcaagaaggaaatgctgtcttcagaagataatgtaggaat 185
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tgcttcaatatctttgctagtcaagaaggaaatgctgtcttcagaagataatgtaggaat 382
Query: 186 tattatatttttttcataacacgtgaagtctctaggtaggagcgacagcaatacctcttt 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 tattatatttttttcataacacgtgaagtctctaggtaggagcgacagcaatacctcttt 442
Query: 246 gggttcttcctgggttctctggacagggaaagcactgcaccacacaaccgagatcctagt 305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 gggttcttcctgggttctctggacagggaaagcactgcaccacacaaccgagatcctagt 502
Query: 306 gcaaaaagcttggttttctcaaagctgccctagcaaattcagttgcttttgtctattttg 365
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcaaaaggcttggttttctcaaagctgccctagcaaattcagttgcttttgtctattttg 562
Query: 366 gtttttttttttaatacccaatttttaaaaacaattttttttttttt----gggtattgt 421
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 563 gtttttttttt-aatacccaatttttaaaaacaatttttttttttttttttgggtattgt 621
Query: 422 ccctttccactgtcttgtacaacctggtccatctaacaatcagttcctttaagaagagct 481
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 622 ccctttccactgtcttgtacaatctggtccatctaacaatcagttcctttaagaagagct 681
Query: 482 gttgctacctcggtttctcataatagccacaatctcccctgcttcctctagcacagaag 540
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 682 gttgctacctcggtttctcataatagccacaatctcccctgcttcctctagcacagaag 740
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space: 492900
Effective search space used: 492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no177_i10.g1 MSMg01no177_i10.g1 CHROMAT_FILE:
MSMg01no177_i10.g1 PHD_FILE: MSMg01no177_i10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 19:50:07 2005
(278 letters)
>mm_chr11_11930081_11930759
Length = 679
Score = 524 bits (271), Expect = e-153
Identities = 277/279 (99%), Gaps = 1/279 (0%)
Strand = Plus / Minus
Query: 1 ttttggagctgtgacctggtggaatcaacagggtaagttgagcactctttcaagcaagaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 ttttggagctgtgacctggtggaatcaacagggtaagttgaggactctttcaagcaagaa 309
Query: 61 gcaata-tttttttccaagtcttgggcaattaaacaattcttttaattcctttattttcc 119
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 gcaatattttttttccaagtcttgggcaattaaacaattcttttaattcctttattttcc 249
Query: 120 aagagtggtattacttatttggttttttagccttctacacttgatctttggtgattgaat 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aagagtggtattacttatttggttttttagccttctacacttgatctttggtgattgaat 189
Query: 180 tcaagccttcgctcctgtaaggtaagtactctaccaactgaacttgtagccttcgccgga 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188 tcaagccttcgctcctgtaaggtaagtactctaccaactgaacttgtagccttcgccgga 129
Query: 240 tctcttattaaaagttttgattcacaattctatatgtgt 278
|||||||||||||||||||||||||||||||||||||||
Sbjct: 128 tctcttattaaaagttttgattcacaattctatatgtgt 90
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 278
Length of database: 679
Length adjustment: 9
Effective length of query: 269
Effective length of database: 670
Effective search space: 180230
Effective search space used: 180230
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
